| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01511 |
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| Symbol | |
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| ID | 6776382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1619005 |
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| End bp | 1621035 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642754947 |
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| Product | putative high-affinity choline transport protein |
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| Protein accession | YP_002125814 |
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| Protein GI | 196156325 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGCA AAGTACAAAG CTCTACCATT CTGCTTCCTG TATTTATCCC CGCGGTCGCG
ATCATTTTAC TTCTGGTTAT TGGAACAATC AGTGACCCTG AACTTGCCGG CGAAGCTTTC
AGCAGTACGT TAGCCTGGAT AACTCAGACC TTTGGCTGGT TTTATATGTT ATCAGTGGCA
ATTTTCCTTG TGTTTATTGT CTCGGTTGCA GCGTCGGGAT GGGGAAATAT CAAGTTAGGT
CCCGACCACG CTGAAGCGCA ATACAGCTTC CCAGAATGGT TTTCAATGTT ATTTTCGGCA
GGCTACGGGG TGGCGCTGCT CTACTTTGGT GTGGCAGAGC CAGTACTACA CTACTCATCA
CCGCCAGCCG GTGCCGCTGA AACGGTTGAT GCAGCAAAAC AGGCAATGCA AATCGCGTTT
TTCCACTGGG GGTTTCATAT ATGGGCGATT TACGGGCTTG TGGGCCTCGT TCTTGCGTAC
TTTGCCTTTC GTCACGGGCT CCCGCTTTCC ATTCGCTCTG CGCTATATCC GCTAATAGGT
GATAAAATTT ATGGTCCTAT TGGGCACGCG GTAGATGTAT TCGCTATTCT CGGTACTCTG
TTTGGTATTG CTACCACGCT GGGGCTATCT GTTACGCAGA TAAATGCAGG GCTCAATTAT
CTCTCTGGCG ATATCCCAAT CGATATCATG GTGCAGGTAG GCACTATCGC TATTGTGACT
ATCGCAGCCA CTATATCGGT TATTGCCGGG ATGGATAAGG GCATAAAACG GCTATCAATT
ATTAATATGC TACTGGCAGT CTCTCTTATG AGTACTGTGT TTATTATGGG TGAAACCATT
CATATTCTGG AAACCTTCCT TCAGAACACT GGAAGCTATA TCAGCGGGAT TGTCGAGCGT
ACTTTTAATC TGCAGGCCTA CAGTCGCAGC GACTGGATTG GTAACTGGAC GCTGTTTATT
TTCGGTTGGA CTATTGCCTG GGCACCATTT GTGGGAATGT TCATCGCCAA AATTAGTCGC
GGTCGAACCA TTCGTCAGTT TGTTTTCGGT GTCATGCTGG TGCCCACTAT TTTTACCTTC
CTTTGGTTTT CAGTGTTTGG TGATACAGCC CTTAATGCAA TAATGAATCA GGGCGTGACA
ACACTTATTA GCGACGTCCA AGAAAACGAA GCCGTTGCCT TATTCAAGCT TTACGATCTG
CTCCCTGGTG CGTCAATTAT GTCGGGGCTG ACGGTACTAC TTATCATCAC CTTTTTTGTG
ACGTCATCAG ATTCGGGATC GTTAGTTATT GACTCTCTTG CATCTGGCGG TCTAGAAGAA
AGCCCTGTAT GGCAACGTAT ATTTTGGGCG TTTTTAGAAG GTACGGTCGC AGCGGTACTG
CTTTTAGCGG GTGGGCTCAA CGCCCTTCAA ACCATGACTA TAGCCAGTGC TTTGCCATTT
GCTTTTATCA TGCTGATCGC TGCCGCCGGT CTTTGGCGCG CGCTCGTCAT CGAAGGCTAT
AGAAATAGCA GCTTGCAAGC TAATACATTG AACAGAAACC GCGGTCGAGC GGCAAACCTC
AAAGGGCGAC TGGCGGCGAT GGTCGAATAC CCTAGTCGTG ACGTGGTTCA TGACTTCATT
AAAAATACGG TGACTGAAGC GATGAGAGAC GTACAGTCTG CGCTTAAGGC ACGGGAGTGG
AAAGCGCACG TTGAATTTGA TGAAGACATG GTAAGGGCGA CCTTCACTGT GGAACGACAT
GATCATATGG ACTTCATCTA TGATATCCGC ATAACCGAGT ATTTAGTCCC AGGTTTCAGC
TATGCTGAAG TGCGCTCAGA AGATGATGAG TCAGAGAAAT ACTATCGCGC TGAAGTGTTC
TTGCGTCGCG GCGGTCAAGC CTACGATATT TATGGCTATG AAAAGGTGAG TATAGCTAAG
GATATCTTGG ATCAGTTTGA AAGCTACTTG CATTTCCTTG ATACCAGTCC AGGGGAACTT
CCTTGGGAAA TGGATGCTTA CGACGATATG CTGCAAAAAC CGGAAAGGTA G
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| Protein sequence | MKGKVQSSTI LLPVFIPAVA IILLLVIGTI SDPELAGEAF SSTLAWITQT FGWFYMLSVA
IFLVFIVSVA ASGWGNIKLG PDHAEAQYSF PEWFSMLFSA GYGVALLYFG VAEPVLHYSS
PPAGAAETVD AAKQAMQIAF FHWGFHIWAI YGLVGLVLAY FAFRHGLPLS IRSALYPLIG
DKIYGPIGHA VDVFAILGTL FGIATTLGLS VTQINAGLNY LSGDIPIDIM VQVGTIAIVT
IAATISVIAG MDKGIKRLSI INMLLAVSLM STVFIMGETI HILETFLQNT GSYISGIVER
TFNLQAYSRS DWIGNWTLFI FGWTIAWAPF VGMFIAKISR GRTIRQFVFG VMLVPTIFTF
LWFSVFGDTA LNAIMNQGVT TLISDVQENE AVALFKLYDL LPGASIMSGL TVLLIITFFV
TSSDSGSLVI DSLASGGLEE SPVWQRIFWA FLEGTVAAVL LLAGGLNALQ TMTIASALPF
AFIMLIAAAG LWRALVIEGY RNSSLQANTL NRNRGRAANL KGRLAAMVEY PSRDVVHDFI
KNTVTEAMRD VQSALKAREW KAHVEFDEDM VRATFTVERH DHMDFIYDIR ITEYLVPGFS
YAEVRSEDDE SEKYYRAEVF LRRGGQAYDI YGYEKVSIAK DILDQFESYL HFLDTSPGEL
PWEMDAYDDM LQKPER
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