| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01440 |
|---|
| Symbol | |
|---|
| ID | 6778884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1535813 |
|---|
| End bp | 1536796 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642754875 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_002125745 |
|---|
| Protein GI | 196156256 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGT CGCCGAACAC AATACAATTA GAAGCTTCAA CGGAAGCTGC GCATTTTGGT
TTACGGTTAG ATCAGGTTTT GGCTGATTTG TTCCCTGAAT ATTCTCGTTC TAAGTTAAAA
ACTTGGATCC AAGATGGGAA TGTTGCTGTA AACGGTGAAG TAATCACCGT GCCTCGCCAC
AAAATGCAAA TGGATGAACT TGTTACTGTA CAGGCCGAAA TGGATGTACA AGTAACGAGC
GAAGCGCAAG ACATCGCGTT AAACATTGTT TATGAAGATG AACACATCCT AGTCATAAAC
AAACCTGCAG ATTTGGTTGT GCATCCAGGT GCAGGAAACC CAAGCGGTAC CGTGCTAAAT
GCCTTGTTAA ATCATTGTCC AGAGATAGAC AAAGTTCCAC GTGCGGGCAT TGTCCATCGC
CTTGACAAAG ACACGACGGG GTTAATGGTA GTAGCAAAAA CAATTCCTGC TCAAACGCAT
CTTGTTGACC AACTTCAACG TCGGGAAATG AGTCGTGAAT ACGAAGCCGT TGCCTTAGGT
ACGATGGTCG CTGGTGGTAT TGTAGATGCG CCTATTGGTA GACACGCAAC AAAACGTACG
CATATGGCAG TACGTGAAAT GGGCAAACCA GCGGTCACTC ATTTTCGTGT TATCGAAAAA
TTTCGCGCAT ACACGCACCT GCGTTTGAAG CTTGAAACTG GCCGTACGCA CCAAATCCGC
GTACACATGG CCCACATTAA GCATCCTTTG CTTGGCGACC AAGTTTATGG CGGGCGTCCT
CGTCTTCCTA AAGGGGCGTC AGAAGAATTT ATCGCTGCGC TTCGCGGATT CCAACGTCAG
GCGTTGCACG CCGCACAGCT CTCGCTGTTT CACCCTGAAA CTGAAGAGTG GATGACGTGG
AAAGCTCCCC TACCTCAAGA TATGCAGGAC TTGCTTAAAG CCGTGAAAAA GGACACCGCG
GACAATCCAC AAGATATGCT TTAA
|
|---|
| Protein sequence | MTQSPNTIQL EASTEAAHFG LRLDQVLADL FPEYSRSKLK TWIQDGNVAV NGEVITVPRH
KMQMDELVTV QAEMDVQVTS EAQDIALNIV YEDEHILVIN KPADLVVHPG AGNPSGTVLN
ALLNHCPEID KVPRAGIVHR LDKDTTGLMV VAKTIPAQTH LVDQLQRREM SREYEAVALG
TMVAGGIVDA PIGRHATKRT HMAVREMGKP AVTHFRVIEK FRAYTHLRLK LETGRTHQIR
VHMAHIKHPL LGDQVYGGRP RLPKGASEEF IAALRGFQRQ ALHAAQLSLF HPETEEWMTW
KAPLPQDMQD LLKAVKKDTA DNPQDML
|
|---|
| |