Gene MADE_01252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01252 
Symbol 
ID6775785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp1345925 
End bp1348117 
Gene Length2193 bp 
Protein Length730 aa 
Translation table11 
GC content47% 
IMG OID642754689 
Productglycogen branching enzyme 
Protein accessionYP_002125560 
Protein GI196156071 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0296] 1,4-alpha-glucan branching enzyme 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.369495 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATTTAG CGCAGCAGTT CGAACAAGTA ACATGTTCCC AACCATTTTC TCATCTTGGC 
GTCATTGCCA GTCAACAAGG TGCAATGCTT CGTGTTTGGT GTCCTGACGC CAGCGAAGTA
ACGATTAAAT GGGAGAATTC TGCGCTAGCT GATCGAGTTA TTAAATCGGA CAATGCGAAT
GGCTTATTTG AAGCGTCACT TCCCGCTGAG TACAACGGTG AAATTTACCG CGTAGTCGCT
AATAAGGGGA GAGGGGATAA TGGTTATATC GACCCTTATC AATTTACTGA ACAGGCTTAC
CATGCCGTAC ATTATATCGA TAGCACGCCA GCAAATTTGT ACGAACAAGC GGGTGCGCAG
TTAATTGATA TCTCTACACC ACAGGGCAAG ACGGTAAGTG GCGTGAGGTT TTGTGTATTT
GCGCCAAATG CAAGCGCGGT ATCACTCATT GGCGATTTCA ACCAGTGGGA CGGACGTACT
CACCCGATGG AGAAAACGTC GATGGGGTAT TGGGTGCTCT TCGTACCCGA GCTCACTGAA
GGCGAACGCT ATAAATATCA TATCAAAGAC GCCAATGGTC ATGATTTACC GCATAAAGCT
GACCCCTTAG GATTCTGTGC TGAGCAGTAT CCTTCTCATG CGTCGAAAAT TTATAATCAC
CGTTCCTACC AGTGGAGCGA TAGTGATTGG ATGGAAAATC GCAAGGGGGA TAAATACGCC
AGCCCTATGA GCATTTATGA GGTTCACTTA GGCTCATGGA AACGACCTGA CGCTGCTACA
GAGGCGCGGT ATCTTACCTA TAAAGAACTT GCCGATGATT TGATTGGTTA CGTTAGCGAT
ATGGGCTACA CCCATGTGGA ACTGCTACCA ATATCAGAGT TTCCTTTCGA CGGCTCGTGG
GGATACCAAC CGGTAGGTAT GTTCGCGCCT ACCAGTCGGT TTGGCAATCC AGATGACTTC
AAATACTTTG TCGATAAATG TCACCAAGCC GGCGTGGGCG TTATCATCGA TTGGGTACCT
GCTCATTTTC CTGAAGATGG ACACGGTCTG GCAAGGTTTG ACGGTTCGTG TGTGTATGAA
TATGAAGACC CTCGTAAAGG CTGGCACCCA GATTGGAACT CATGTATCTA TGACTTTGGC
AAAGATACCG TTCGTCAATT TTTAGTTGCC AATGCTCTTT ACTGGCTTGA CAAGTTTCAC
GTGGACGGAC TTCGGGTTGA TGCGGTAGCG TCTATGCTTT ATTTAGATTA CTCCCGCAAC
GAAGGCGAGT GGATCCCGAA CGTTGACGGC GGTAATGAAA ATTACGAAGC GATAAGCCTG
CTTAAATGGA TGAACGAGGA AGTATACAAG CACTTCCCAG ACGCTATGAC TATAGCGGAA
GAGTCCACGT CATTTCCCAA AGTATCTCGC CCTGTTTTCG ACGGTGGCTT AGGCTTTGGC
TTTAAATGGA ACATGGGCTG GATGCACGAC TCGCTGCACT ACATTGCAAA AGACCCTGCA
TATCGGAATT ACCACCACGG TGATATCACG TTTAGCATGG TTTATGCCTT TGATGAAAAT
TTTGTTTTAC CCATTTCCCA TGATGAAGTC GTACATGGTA AAGGCAGCAT GCTACATAAG
ATGCCGGGCG ATGAGTGGCA ACAAGCCGCT AATTTGCGCT GTTACGCAGG TTTCATGTAT
GGCCATCCAG GCAAGAAGCT TAACTTCATG GGTAACGAAC TGGCGCAAGC ACGGGAATGG
AATCACGATA GCAGCTTAGA CTGGCACTTG CTTGACTTCG AAAAGCACGC AGGTATCCAA
GCGCTGTATA AGGCGTTAAA CCATTTGTAC ACCTCCACCC CAGCCCTTTA TGAACAAGAT
CATGACCCGG CGGGTTTTGC GTGGCTTGAT CACAGCAATG CGGATCAAAG CGTTGTGTCG
TTTGTTCGCA CTTCAAAAGA TGCAAAGCAA AAAGTCTACG TGGTGTCTAA CTTTACGCCT
GTCCCGCGCA AGAACTTTAG AATTGGTGTG GATGAAGCCT GCACGTTGAC GCTGGCGCTG
AACACCGACG ATGGGGTTTA TTGGGGTAGC AACTACGAAG TCGTTGCCAA CACAACCGCA
CAACTTGTTC CGTGGAATGA TCGTAGACAT TCAGTAGAGA TAACCTTACC GCCACTTGCT
ACGGTGTTTT ACGTTGCTGA TTTGAGTGAA TAA
 
Protein sequence
MHLAQQFEQV TCSQPFSHLG VIASQQGAML RVWCPDASEV TIKWENSALA DRVIKSDNAN 
GLFEASLPAE YNGEIYRVVA NKGRGDNGYI DPYQFTEQAY HAVHYIDSTP ANLYEQAGAQ
LIDISTPQGK TVSGVRFCVF APNASAVSLI GDFNQWDGRT HPMEKTSMGY WVLFVPELTE
GERYKYHIKD ANGHDLPHKA DPLGFCAEQY PSHASKIYNH RSYQWSDSDW MENRKGDKYA
SPMSIYEVHL GSWKRPDAAT EARYLTYKEL ADDLIGYVSD MGYTHVELLP ISEFPFDGSW
GYQPVGMFAP TSRFGNPDDF KYFVDKCHQA GVGVIIDWVP AHFPEDGHGL ARFDGSCVYE
YEDPRKGWHP DWNSCIYDFG KDTVRQFLVA NALYWLDKFH VDGLRVDAVA SMLYLDYSRN
EGEWIPNVDG GNENYEAISL LKWMNEEVYK HFPDAMTIAE ESTSFPKVSR PVFDGGLGFG
FKWNMGWMHD SLHYIAKDPA YRNYHHGDIT FSMVYAFDEN FVLPISHDEV VHGKGSMLHK
MPGDEWQQAA NLRCYAGFMY GHPGKKLNFM GNELAQAREW NHDSSLDWHL LDFEKHAGIQ
ALYKALNHLY TSTPALYEQD HDPAGFAWLD HSNADQSVVS FVRTSKDAKQ KVYVVSNFTP
VPRKNFRIGV DEACTLTLAL NTDDGVYWGS NYEVVANTTA QLVPWNDRRH SVEITLPPLA
TVFYVADLSE