Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01131 |
Symbol | |
ID | 6775201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | + |
Start bp | 1208519 |
End bp | 1210438 |
Gene Length | 1920 bp |
Protein Length | 639 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642754568 |
Product | ATP-dependent helicase |
Protein accession | YP_002125439 |
Protein GI | 196155950 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.625206 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCACAA TAAACAATGT ATTTTCTTCA GATGGCCTTC TTGCCAGTGC TATTAAAGGC TTTGTGCCTC GCGAAGCACA AACTGAAATG GCTAAAGCCG TTAAGCATGC CATTGAAACC ACGGGCAGTT TAATTGTTGA AGCAGGTACA GGTACGGGAA AGACGTTTGC GTATTTGGCG CCTGCTTTAT TGAGCGATGG CAAAGCGATT GTCTCGACCG GCACGAAAAA CCTTCAAGAA CAGCTCTTTC ATCGCGATCT CCCCCTCGTT AAAAAAGCGC TTGGCAGTAA GCGTAAAACC GCACTGTTAA AAGGCCGCGC CAATTACCTT TGTCTTCACC GGCTTGCGCA GCACGGCGGC AATTCTACGC TGGTTGAAAA AGACGTGTTG GGGCAGCTTT CAGAAGTTAA GCGTTGGTCG AGCACCACGA AGACCGGGGA TATGGGCGAG TTAAAAACGC TGCCAGAAGA TGCCCGAGTA CTGCCGTTAG TGACGTCTAC CGTGGATAAT TGTTTAGGCC GGGACTGCCC TGACTACGAA GACTGCTATT TGGTTAAAGC GCGCAGAAAG GCGCTGGATG CCGACATTAT CGTGGTTAAC CACCACCTTT TCTTTGCCGA TATGGCGCTA AAAGATACCG GTTTTGGAGA ACTTATTCCC GAGGCCGATG CCATCATCTT TGATGAAGCG CACCAAATTC CAGATATTGC CAGCGACTAT TTTGGTGAAT CGCTTTCAAC ACGGCAAATT CACGATATCG CGAAAGACAT CACCTTGTTG TTTAGGACCG TATTGAAAGA TGCGGGTCAA CTAGATAAAG CCGCCGACAA GTGCAGAATG ATTGCTTCTG ACTTACGGTT GCTGTTTCCC GATACCGCAG AGCGCGGCAA CTGGGCAGAG GCATTAGACC GAGATGATGT GCGTATGCAG GTAGGTAAAC TTGCTGAAGC CCTTGGCGTG CTGCACGAGG TGTGTAAGCT GCATATCGGG CGCGATAAAG ATTTAGACAA TATGTATGAA CGGGTTGTGG CTGCAAGAGA GCAGCTAGAC GCGCTCAGTG ACAATAAGCA AGAAAATGTC AGCTTATGGT ATGAAACTAC GCAACGTCAT TTGATCATGC ACCTCACGCC ATTGTCGATA GCGGCCAAAT TTAGACGGTT TGTGTCATCT CCCCCTCGCG GGTGGATTTT TACCTCGGCA ACGCTAATGG TCAATGGTGG ATTTGATCAC TTCCAGCGTC GAATGGGGTT AGAGGATGCT GAAACCTTAG GGTTAGACAG CCCATTTAAC TACCCCGAAC AAGCCATGCT TTGTGTGCCT CGTTATTTAC CAGAGCCCAA TAGTTATGCC ATGCGGGAAA CGCTTCTCGA AACGGCCAAG CGGTTGATTA AAGCAAGTCG TGGTCGCTGC TTCTTACTGT TTACCAGCCA TGCGATGCTT AGAGAAATTG CACAAAAGCT GGAGGATGAG GTAGACAACC CGCTGCTAGT ACAAGGTACT ACAACAAAAC AAGCACTGTT GGATGCCTAT CTTGCTGATG AAAAAGCGGT GTTAATGGGC ACGGGGGCAT TCTGGGAAGG GGTAGACGTA CGCGGTAATG ACCTTGTTTG TGTCATGATT GATAAATTGC CCTTTGCATC ACCGGACGAC CCGCTGCTTC AGGCCCGTAT GGAAGACGTT AAAAAGCGTG GCGCAAACCC GTTTGGTGTT ATACAGATCC CTCAGGCTGT TATTACGCTA AAGCAGGGAG CAGGGCGCTT AATTCGAGAC CCGTCAGATA AGGGCGTACT GGTTATTTGT GATAACCGTT TGGTTACCAA GCCCTACGCG AAAACCTTTG TTGGCAGTCT GCCTGACATG AAGCGCACCA GAAGTTTAGA CGAAGTAGAA AAATTTTTAG CCGGCATTGA TGAAGCCTAA
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Protein sequence | MPTINNVFSS DGLLASAIKG FVPREAQTEM AKAVKHAIET TGSLIVEAGT GTGKTFAYLA PALLSDGKAI VSTGTKNLQE QLFHRDLPLV KKALGSKRKT ALLKGRANYL CLHRLAQHGG NSTLVEKDVL GQLSEVKRWS STTKTGDMGE LKTLPEDARV LPLVTSTVDN CLGRDCPDYE DCYLVKARRK ALDADIIVVN HHLFFADMAL KDTGFGELIP EADAIIFDEA HQIPDIASDY FGESLSTRQI HDIAKDITLL FRTVLKDAGQ LDKAADKCRM IASDLRLLFP DTAERGNWAE ALDRDDVRMQ VGKLAEALGV LHEVCKLHIG RDKDLDNMYE RVVAAREQLD ALSDNKQENV SLWYETTQRH LIMHLTPLSI AAKFRRFVSS PPRGWIFTSA TLMVNGGFDH FQRRMGLEDA ETLGLDSPFN YPEQAMLCVP RYLPEPNSYA MRETLLETAK RLIKASRGRC FLLFTSHAML REIAQKLEDE VDNPLLVQGT TTKQALLDAY LADEKAVLMG TGAFWEGVDV RGNDLVCVMI DKLPFASPDD PLLQARMEDV KKRGANPFGV IQIPQAVITL KQGAGRLIRD PSDKGVLVIC DNRLVTKPYA KTFVGSLPDM KRTRSLDEVE KFLAGIDEA
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