| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01028 |
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| Symbol | |
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| ID | 6778983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1084819 |
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| End bp | 1088829 |
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| Gene Length | 4011 bp |
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| Protein Length | 1336 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642754460 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_002125336 |
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| Protein GI | 196155847 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATA TTACCCCATC CTCTGCAAGC GATATGGCAA CCCAAACCCA GCTTGAAACC
AATAAAAAGG CCAACAATGA CGCGCAACTG CTTGATGTGG TAGCAATGCC ATTAAAAGGG
CGGCATCTAA TAGAAGCCAG CGCAGGGACG GGTAAAACCT TTAACATTAC CCGGTTATAT
TTGCGCTTAC TGTTAGAAAA AAAGCTGACG GTAAAAGAAA TATTGGTAAT GACGTTCACC
AAAGCTGCCA CCGAAGAAAT AAAAGGGCGT ATTGCCAAAA CCTTAAGAGA GGCGTTTCTG
ATTTGGCAGC AAGCCAAAGA GAATGACAAT CAAATTGACA GCAACTGCGA CCCTGTTTAT
CAGCATTTGT TTACTCGCTG TAATACCGAC GAAAGCATGG CTTTGCTAAA AGCTGCACAG
TTAGAACTTG ATGAAGCGTC GGTTTTCACT ATTCACGCCT TCTGCCAGCA CGTCATTACC
CAATTGGCGT TTAACAGTGG TTTTGCCATG TCGTTAAACT TAGGTAATGA CACTAGCGAT
TTGTACCTTC AGGCGGCAGA AGACTACATT CGAAAGGTGA GCAAGAACGA AGACGATTTT
AGGCTGTTGG CAGAGTCAGG GTGGCATACA CCTGAAAGGC TGTTACTGGA GTTTAATGCC
AGCATTAAAA GTACTCTGAC CCCATTAATG CTTAGCGAGC AGGATATTGA GCTTGCCTAT
CAAAGGCAGC TAGATGAATC GCCGCATACT TCTGTGGCCT ACGTAAAAAC GCTATCGCAA
AGCGTAGAAG ATAATGAGGG GTTGTTAGTT GAGCAGCTTA TTAAAACACC TGCTCATAAG
AAAGAAAGGC CGCAGGAATT GGCCGCATTA AAGAGCTGGC TACGTTCATG CGCAGATAGC
GGGCAATATT ACTTACCCCC GCCTGAAGCA GAGGCATTTG TTAAAGGCAC TCGCTACGCG
AGAAATTCTT CAGGGGTAAA AGAAATACTA ACGCCGATTA AAGAATTTGC TACTGCATTG
AAAAAAGTAT TCGGCGAAAA GGATAAGGCA CTGGCTAAAG TACCCGTGTT TAAGCTGGTT
ATAGAAGCCA TTGCGTTCAT TAAAGGGCGC GTTGATAAAC AGAAAAAGCA ACTTGGTGTT
ATCGATTTTG ACGATCTTAT TCGCATGTTA GCCGATGAGG TGGTTAAGCC TAACAATACG
CTTGTCCCTG AACTTCGTAA AAAATTTCCT GTGGCGCTTA TTGATGAGTT CCAAGATACC
GATGCCAAGC AATACGCTAT TTTGGACGCG GTTTATCCCA ATGCATCGAG CAATTCGGCC
TCACAAACAG AAACAGATCT TTCAAACGAT AACGAGGAGA GCGCGTCGGC AAGAGTCAGT
GCGTTATTAA TGATTGGCGA CCCTAAACAG GCGATATATC GCTTTCGCGG AGGGGATATC
TTCACCTACT TGAAAGCGGG CAGACAAGCA GACTATCGCT GGGTAATGAA CACCAACTGG
CGCTCGGTAG AGGGGATGGT AAAAGCCTAT AACCGGTTAT TTTATGGTGC ACCTGTGGCA
TCAAATACCC CAACTGATGT GTTTGGCTTT GATATCAAAT ACAACCCCGT TGAATTTACG
CCCAAAGCGG CAGCGGCTAA AACCCCATTG AGAGACCCTG CAGCGCAGCG TAGCGCGATG
AATTACGTGA GCCTGTGCTT GGAAGAGAAA GAAAATACCA ACATTATGCG TCGTAAAATG
GCGCAGTGGA TTGCGCAAGA GATTTATCGC CTGCTAAACG AGGCTCAATT TCAATTGGAC
AACGGCGAAA CAAAACCGGT AAAGCCGCAA GATATCGCTA TCTTGGTAAA AGACAGGACC
GAAGCCGGCG CTATTAAAAA CGTTCTACAG CAAAAAGGGT TAGCCTGCGT TTATTTAAGT
GATCGCAGCA ACTTGTTTGC CAGTGCCGAA GCGAAAGATG TCCTCAGGCT TCTTAACGGT
ATATGGCATG CGAACGATAC CAGCAACGTT TCCTCTAGCT TAGCATCTCC GCTTTGGGGC
TATAGCCCGC AGACCCTCAT TGAACTGCTT TACCACGAAG ATGATGCTAT GTGGGATAAA
GCGATGGACA AAGTATTGTC TTTACGCGAC ATGTGGCTTC AAAAAGGCTG TATGAGCGTG
CTTTTGCACC TAATGCAAGA CAGCTACGTC CCCCATGCTG ATAACGTGGA GCGCGCGCTT
ACAAACTATC AGCATCTTGC CGAAGTGCTG GAAAAAGCCA GTACCACGCA CCAGCGACCC
GAACAGCTAC TCGACTGGTT AAATAAACAA ATTCACAAGC CAGAAAGTGA TGAAGAACTT
ACGTTACGCC TTGAAAGTGA CAGCCAGCTA ATTCGCCTTA TTACCCAGCA CGGTTCAAAG
GGCCTTGAAT ACCCCATCGT GTTTGTTCCT TACGCAACCG GCTATAAGGA TGCATCGAAA
AATGGTAAAT CTACGTCACA AATATTTACC TTTTACGATG AAGACAAGCA AGATTTGCAA
ATGCAGTTAG GACAGACCGC TCAAGCTATA GCTCGTGTTC AACGCGAAAG CGAAGCAGAA
GACATGCGCC TTGCTTATGT TGCGGTGACG CGTGCGGCAC ACCGTTGTTA TATGGGGGTT
ATTCCACTGG CTAATAACGA AAAAAGCGCG CTGGCCCGCG CCTTGGGCTT GAGTGGCGAT
GAGAGTACGA ACAGAGACTG GCCGAGTGTA TTACGCCGTG TCGCCGAGGA GGATGAGTCT
CATGCTAGCT ATATTGACGG CGATGAATTT GAAGAAATCT ATTCAGGTTT TGAACAAGGT
GACGCGATAC CTCAACTCAC AGCACTACAA TTTACGGGTA CTGCAAGCGA AGAATGGCGG
CTCTATTCAT TTTCAGCCAT GAGCCGTTTA ACTACCGTAG GCTCGGTGAA AAGTACAGAT
ACTGTTGAGG GCGCGGGTCA AAGCCTTCCA AGCGTACCTG TACTTCGAAC CGTACGCGAT
GAAGAAGTGT ACGCGCTCGA TACGCTTTCC ACTGACGGAG AGATACTTGG TGCTATAGAT
GTAGACTCTC ACACCCCGTT GACACAAACG AGCGCAGTAA CGAAAAATGA CTTGCGCTTT
ACGCTAGAAA AGGGCGCAAG TGCAGGTAAC TTACTTCACG ATATCTTAGA ACACAGTGAT
TTTAGTGCGC CGGTTTGGGA AGAAACTGGC AAAGAGTTAG TGAATCGCTT TGGGTTAGAG
GAAAAGCGTA CGCCTTTTCT TTACGAGTGG CTTGAAGAAG TTTTACAAAC GCCTTTGTAC
CCCAATGTGC AACTGTGTAT GAGTGACTTG ACGTTAGAGC AAACTCTGCG CGAGGCTGAG
TTTTATTTTC CAATGAACGA TACCCAGTGG AAACAGCTTC GAGAAGTGCT TAATACCCAT
CGGCAAAGCG TGGCGGAAAC CTTAGGCGGT GAGGCTGAAC CGGCTCCCCA GCTCATTACG
GCTAAACTTA AAGGTATGAT GCATGGATTT ATCGATTTAA TTTTTGAACA TGACGGTCAG
TTCTTTGTAG CCGATTACAA GTCAACTTGG TTGGGTGATA CCCTTGAAAG CTACATGCCT
TCAGCGCTGT TTCACAATAA TCAGCACCAC CTTTATGATC TTCAGTATTT AATATACTGT
TTAGCGTTAC ACCGCTATTT AAGCAATACG CTGCCTGATT ATGAACCCGA TATCCACTTT
GGCGGCGTTT ATTACCTTTA TTTACGTGGT ATGCACCCAG AGAACGAGCA AGGTGAAGGG
GTGTTTTATA CCCATATTCC ATCCAGTTTG CTTCATCAAC TGGACGCTAT TTTCGCAAGT
AAAAGCGCTA CGCACACCCC TCCAGACCCG CTAGATAATG GGGAAGAAAA CGAGGCACCG
TTAAGTGAAC CAGATTCGGC TGACCCACTT CAAAAAGATA CGAATGCTAA TTCTTCAAGT
GAAAGCCAAA AACCTTCGGG TCAGCAGCAA TTTAGTTTCG ACGACGAATA G
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| Protein sequence | MSNITPSSAS DMATQTQLET NKKANNDAQL LDVVAMPLKG RHLIEASAGT GKTFNITRLY
LRLLLEKKLT VKEILVMTFT KAATEEIKGR IAKTLREAFL IWQQAKENDN QIDSNCDPVY
QHLFTRCNTD ESMALLKAAQ LELDEASVFT IHAFCQHVIT QLAFNSGFAM SLNLGNDTSD
LYLQAAEDYI RKVSKNEDDF RLLAESGWHT PERLLLEFNA SIKSTLTPLM LSEQDIELAY
QRQLDESPHT SVAYVKTLSQ SVEDNEGLLV EQLIKTPAHK KERPQELAAL KSWLRSCADS
GQYYLPPPEA EAFVKGTRYA RNSSGVKEIL TPIKEFATAL KKVFGEKDKA LAKVPVFKLV
IEAIAFIKGR VDKQKKQLGV IDFDDLIRML ADEVVKPNNT LVPELRKKFP VALIDEFQDT
DAKQYAILDA VYPNASSNSA SQTETDLSND NEESASARVS ALLMIGDPKQ AIYRFRGGDI
FTYLKAGRQA DYRWVMNTNW RSVEGMVKAY NRLFYGAPVA SNTPTDVFGF DIKYNPVEFT
PKAAAAKTPL RDPAAQRSAM NYVSLCLEEK ENTNIMRRKM AQWIAQEIYR LLNEAQFQLD
NGETKPVKPQ DIAILVKDRT EAGAIKNVLQ QKGLACVYLS DRSNLFASAE AKDVLRLLNG
IWHANDTSNV SSSLASPLWG YSPQTLIELL YHEDDAMWDK AMDKVLSLRD MWLQKGCMSV
LLHLMQDSYV PHADNVERAL TNYQHLAEVL EKASTTHQRP EQLLDWLNKQ IHKPESDEEL
TLRLESDSQL IRLITQHGSK GLEYPIVFVP YATGYKDASK NGKSTSQIFT FYDEDKQDLQ
MQLGQTAQAI ARVQRESEAE DMRLAYVAVT RAAHRCYMGV IPLANNEKSA LARALGLSGD
ESTNRDWPSV LRRVAEEDES HASYIDGDEF EEIYSGFEQG DAIPQLTALQ FTGTASEEWR
LYSFSAMSRL TTVGSVKSTD TVEGAGQSLP SVPVLRTVRD EEVYALDTLS TDGEILGAID
VDSHTPLTQT SAVTKNDLRF TLEKGASAGN LLHDILEHSD FSAPVWEETG KELVNRFGLE
EKRTPFLYEW LEEVLQTPLY PNVQLCMSDL TLEQTLREAE FYFPMNDTQW KQLREVLNTH
RQSVAETLGG EAEPAPQLIT AKLKGMMHGF IDLIFEHDGQ FFVADYKSTW LGDTLESYMP
SALFHNNQHH LYDLQYLIYC LALHRYLSNT LPDYEPDIHF GGVYYLYLRG MHPENEQGEG
VFYTHIPSSL LHQLDAIFAS KSATHTPPDP LDNGEENEAP LSEPDSADPL QKDTNANSSS
ESQKPSGQQQ FSFDDE
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