Gene MADE_01004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_01004 
Symbol 
ID6775108 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp1054848 
End bp1055837 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content46% 
IMG OID642754436 
ProductTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
Protein accessionYP_002125312 
Protein GI196155823 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.0283206 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAGCA CCAAGTTCAC TGTTACCGTA TTAGGCTTCG ACCAAGCCCT TGCCTCAGCC 
ATCACTGGCG CGCTTGATGT CTTCGCTTTT GCTGGCATCA GTTGGCAGCG TATTCACAAA 
CTTTCCCCTT CTCCACAGTT TAGGGTGCAG TTGGCAAGCC ACCACGGCCA GCCTTTTATG 
TGTTCGAACC AAATCATGTT ACAACCCAAC ATCGCCATTG AGGATGTATC ACACACCGAT 
ATCCTTCTTA TTCCCACTAT TGGCGGGAAT ATCGACGAAG TACTGAGAGA TACACAGCCT 
CTACTCGTAC ATATAAAACG TTTGCAAAAA GTAGGCGCTG ACATTGCGGC GAACTGCACA 
GGAACATTTT TACTCGCCCA GACAGGTCTT TTAACGAACA AAACCGCAAC TACTCACTGG 
GGCTACGCTG ACAAGTTCAA ATCTATGTAC CCGAACGTTA ATTTACAGCC AGACAAAATG 
GTAACGGAAG ACAATGCGGT TTATTGTGCA GGGGGTGGGA TGGCATGGAT AGACTTATCC 
ACGCAATTAA TTGAACGTTA CTGCGGGCAC CAAATTGCAA GTGATACCGC TAAATCACAT 
GTGCTAGATG TGTCTAGAAC AAGCCAAACG ATTTACGCGA GCAGCAGGCA GCGCCGGCTT 
CATGCTGACA AAGACATCAT GGAAATTCAG TCGTATTTAG AGAAAAACAT GCGCAGCAAA 
ACCACGCTTG CAGAATTAGC CAAGAAACAC AATATGACTG AGCGCACAAT GATCCGCCGA 
TTCAAAAACG CCTGTGATAT TACACCTGGT CAGTACTTAC AAGCACTACG TATTGAACAA 
GCTCGCAAAC TGTTAGAAAC ATCTACTATG CCGCTAGAAA ACTTAATAAA CGCTGTAGGT 
TACGAAGATT TAAGTTCCTT CACTCGCTTG TTTAAGAAGA CGACGGGGCT CTCTCCGTCA 
CAATACCGCA TAAAATTTAA CCGCAGCTAA
 
Protein sequence
MNSTKFTVTV LGFDQALASA ITGALDVFAF AGISWQRIHK LSPSPQFRVQ LASHHGQPFM 
CSNQIMLQPN IAIEDVSHTD ILLIPTIGGN IDEVLRDTQP LLVHIKRLQK VGADIAANCT 
GTFLLAQTGL LTNKTATTHW GYADKFKSMY PNVNLQPDKM VTEDNAVYCA GGGMAWIDLS 
TQLIERYCGH QIASDTAKSH VLDVSRTSQT IYASSRQRRL HADKDIMEIQ SYLEKNMRSK 
TTLAELAKKH NMTERTMIRR FKNACDITPG QYLQALRIEQ ARKLLETSTM PLENLINAVG 
YEDLSSFTRL FKKTTGLSPS QYRIKFNRS