Gene MADE_00955 details

Gene Information

• Locus tag: MADE_00955
• Symbol: rpsE
• ID: 6776563
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 999951
• End bp: 1000451
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642754387
• Product: 30S ribosomal protein S5
• Protein accession: YP_002125263
• Protein GI: 196155774
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.136647
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAC AAGACGTTCA AAATGGTGAA TTTCTAGAGA AATTGATCGC TGTAAACCGC 
GTTTCTAAAG TGGTTAAAGG TGGTCGAATC TTTAGTTTCA CTGCATTGAC AGTAGTGGGT 
GACGGTAACG GTCGCGTTGG TTTTGGTTAC GGTAAGGCAC GTGAAGTACC TGCTGCAATC 
CAAAAAGCAA TGGAAAAGGC ACGTCGCAAC ATGGTTGACG TAGACCTTAA CGGTCACACG 
TTACAGCACC CGATTAAAGG TCGTCACTCT GGCTCTAAAG TTTACATGCA ACCAGCATCT 
GAAGGTACCG GTATTATTGC CGGTGGTGCG ATGCGTGCAG TACTTGAAGT AGCTGGTGTA 
CAAAACGTAC TTTCAAAATG TTACGGCTCT ACAAACCCAA TCAACGTTGT ACGTGCAACA 
ATCAACGCGC TAACAGAAAT GAATAGCCCG GCGAAAGTTG CTGCGAAGCG TGGATTGTCT 
GTAGAAGAAA TTTTGGGGTA A 

 

Protein sequence

MAKQDVQNGE FLEKLIAVNR VSKVVKGGRI FSFTALTVVG DGNGRVGFGY GKAREVPAAI 
QKAMEKARRN MVDVDLNGHT LQHPIKGRHS GSKVYMQPAS EGTGIIAGGA MRAVLEVAGV 
QNVLSKCYGS TNPINVVRAT INALTEMNSP AKVAAKRGLS VEEILG