Gene MADE_00562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00562 
Symbol 
ID6777248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp593422 
End bp594177 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content45% 
IMG OID642753996 
ProductSec-independent periplasmic protein translocation protein TatC 
Protein accessionYP_002124874 
Protein GI196155385 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0805] Sec-independent protein secretion pathway component TatC 
TIGRFAM ID[TIGR00945] Twin arginine targeting (Tat) protein translocase TatC 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGACG CTAACAACCT AATTTCTCAT TTAATTGAAC TGCGCAGTCG TATTCTCAAA 
GCGCTTTTGA GTGTACTGGT TGTGTTTATT TGTCTAGCCG CATTTGCACA GGACCTTTAC
CAGCTATTAG CGATGCCGCT GCTTGAAACC CTGCCTGAAA ATTCAAGTAT GATTGCAACT
GACGTTGCGT CACCTTTTTT CGCACCTTTC AAGCTAACGC TGGTGTTATC ATTTTTTATT
GCGATCCCCT ATGTGCTGTA CCAAGTGTGG GGCTTTGTGG CTCCCGGGTT ATACCGCAAT
GAAAAGCGTC TAGTGGCACC GTTATTACTT TCAAGCACGC TACTTTTTTA CGCAGGCATG
GCTTTCGCCT ATTTCGTGGT ATTTCCGATA GCCTTTGCGT TTTTTACTAG TGTTGCGCCA
GAGGGAGTAA CGGTAAGTAC GGACATCTCA AGCTATTTAA ACTTCGTATT GAAACTGTTT
TTCGCATTTG GGGTCTCATT CGAGATACCA ATAGCCATTA TTTTAATGTG TTGGACCGGG
GTCACCGATG CTAAATCATT ACGCGCCAAG CGCCCCTATG TGGTTGTTGG TGCTTTTGTT
GTGGGTATGT TGCTAACCCC CCCTGATATT ATCTCTCAAA CACTATTAGC GATTCCCATG
TGGCTGTTGT TCGAGGTTGG GGTCATTGTG GGTGGCTTTT ACGCAGGCAA GAAACCTAGC
GATGAAGTCT CAGAAGAGTC GCCTGACAAC ACATAA
 
Protein sequence
MSDANNLISH LIELRSRILK ALLSVLVVFI CLAAFAQDLY QLLAMPLLET LPENSSMIAT 
DVASPFFAPF KLTLVLSFFI AIPYVLYQVW GFVAPGLYRN EKRLVAPLLL SSTLLFYAGM
AFAYFVVFPI AFAFFTSVAP EGVTVSTDIS SYLNFVLKLF FAFGVSFEIP IAIILMCWTG
VTDAKSLRAK RPYVVVGAFV VGMLLTPPDI ISQTLLAIPM WLLFEVGVIV GGFYAGKKPS
DEVSEESPDN T