Gene MADE_00551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00551 
Symbol 
ID6777342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp582200 
End bp582745 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content43% 
IMG OID642753983 
Productoligoribonuclease 
Protein accessionYP_002124863 
Protein GI196155374 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.675487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAAC ACGACAGTAA CCTTGTTTGG ATAGACATGG AAATGACAGG GTTAGATCCT 
GAAACCTGCG TAGTTATGGA AATTGCCACC ATAGTTACCG ATGCACAGCT TAATATTTTG 
GCTGAAGGCC CCGTAATAGC GGTACATCAA AGTGATGACG TGTTAAACAA CATGGACGAG 
TGGTGCACAC GCGTTCACGG AGAAAGTGGG CTTACTGCGC GTTGCCGAGA GAGTAAAATA 
AGCGTAGAAG AAGCATCCGC ACAGACTATT GCCTTTTTAG AGCAGTGGGT AGATGCAGGT 
AAATCACCAC TGTGTGGAAA CACCATTGGG CAAGACAGAC GATTCATGGT TAAGTACATG 
CCCGAGCTTG AAGCTTACTT CCACTATAGA AATATTGATG TAAGTACAAT AAAAGAGCTA 
ACGCGCCGCT GGAAGCCTGA AGTTTTAGAT GGTTTCGAAA AGAAAGGCGT ACACTTAGCC 
TTAGATGATA TTCGCGAGTC TATTGAAGAA ATGCGCTATT ATCGAGAGAA AGTGTTTACG 
ATTTAA
 
Protein sequence
MSKHDSNLVW IDMEMTGLDP ETCVVMEIAT IVTDAQLNIL AEGPVIAVHQ SDDVLNNMDE 
WCTRVHGESG LTARCRESKI SVEEASAQTI AFLEQWVDAG KSPLCGNTIG QDRRFMVKYM 
PELEAYFHYR NIDVSTIKEL TRRWKPEVLD GFEKKGVHLA LDDIRESIEE MRYYREKVFT 
I