Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00509 |
Symbol | |
ID | 6777451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 540115 |
End bp | 541167 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642753941 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_002124821 |
Protein GI | 196155332 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0026349 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTTG GAGAACGTAG CTATCCTATA CAGATAGAGG CTGGGCTGCT TTCGCAACCT GGCCTTTTTA GTGCCTACAT AAAAGGCCCG CTTGCCGTTA TTGTGACCAA CGAAACCGTT GCTCCACTTT ATCTTGAAAC GGCGAAGGCG GCATGTGGTG ACGTTCACGT TGAAACCATT ATCTTGCCTG ACGGTGAGCA GCATAAAAAT TTAGCGCAGT TCGAAGTTGT GATGACCCGC CTTCTTGAGC TTAACGCCGC CAGAGATACC ACGCTAATTG CATTAGGTGG CGGCGTAATC GGTGACCTCA CAGGCTTTGT TGCAGCGACC TATCAAAGGG GCGTGCCTTT TATTCAGGTT CCTACCACAT TACTTTCTCA AGTAGACTCA TCGGTTGGCG GTAAAACGGC GGTAAACCAC CCTCTAGGTA AAAACATGAT TGGTGCATTT TACCAACCTG TTTATGTTGC TATCGATACC GACTCGCTGG CGACACTACC GCCAAGAGAA TTTGCTGCAG GTATGGCAGA AGTGATTAAA TACGGCATCA TTTACGATGC TGACTTTTTC ACTTGGCTTG AAGAAAACGT AAATGCACTC ACTTCACTAG ACACAAGCAT CCTAACCCAA GCTATTTCCC GCTGTTGTGA AATTAAAGCC GATGTTGTTG CTAAAGACGA GCGAGAAGGT GGTCTGCGCG CCATTCTCAA TTTAGGCCAC ACGTTTGGAC ACGCAATTGA AGCAGAGCAA GGATATGGCA ATTGGTTACA TGGCGAAGCG GTGGCCGCTG GTACTATACT TGCTTGTAAA GCTGCAGAAG GTTTATCGTG GTTTTCAGCG TCAGAAACAC GTCGCGTGTC TGCGCTATTT GAAGCGTTTA CATTGCCTGT TAAAGGGCCA AGTAGCATGA CTAAGGACGA CTACGTTAAG CACATGAAAC GCGATAAAAA GGTGGAAGCA GGCAATATTC GTTTTGTCCT TCCCCAAGGT ATTGGCAAAG CGGTGGTCAC CAAGGACGTT ACCGACGACA TTCTAACTGA CATTATTGCT TAG
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Protein sequence | MELGERSYPI QIEAGLLSQP GLFSAYIKGP LAVIVTNETV APLYLETAKA ACGDVHVETI ILPDGEQHKN LAQFEVVMTR LLELNAARDT TLIALGGGVI GDLTGFVAAT YQRGVPFIQV PTTLLSQVDS SVGGKTAVNH PLGKNMIGAF YQPVYVAIDT DSLATLPPRE FAAGMAEVIK YGIIYDADFF TWLEENVNAL TSLDTSILTQ AISRCCEIKA DVVAKDEREG GLRAILNLGH TFGHAIEAEQ GYGNWLHGEA VAAGTILACK AAEGLSWFSA SETRRVSALF EAFTLPVKGP SSMTKDDYVK HMKRDKKVEA GNIRFVLPQG IGKAVVTKDV TDDILTDIIA
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