| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00320 |
|---|
| Symbol | |
|---|
| ID | 6775973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 349114 |
|---|
| End bp | 352251 |
|---|
| Gene Length | 3138 bp |
|---|
| Protein Length | 1045 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642753749 |
|---|
| Product | cation efflux system protein CusA |
|---|
| Protein accession | YP_002124632 |
|---|
| Protein GI | 196155143 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.665603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAG CAGTCATACG TTGGTCGGTC TCAAACCGCT TCTTTGTTTT ACTCGCAACC
ATCATCATAG TCGGTGGCGG TTTAGTTACA ATGAAAAATA CGCCAGTAGA TGCGATCCCA
GATTTATCCG ATGTCCAAGT GATAATCAAA ACGAGTTATC CTGGTCAAGC GCCACAAGTT
GTAGAAGATC AGGTAACGTA CCCGCTAACG ACCGCCATGC TTTCCGTACC GGGTGCACAA
ACGGTTCGAG GTTATTCGTT TTTCGGTGAC TCCTACGTTT ATATCATTTT TGATGATGAT
ACCGACTTAT ATTGGGCAAG AAGCAGGGTG CTTGAATATT TATCGCAAGT TGCCCCCAAT
CTACCTGAAA ACGCCAGGCC GCAATTAGGT CCAGATGCCA CAGGCGTTGG TTGGGTTTAT
CTGTATGCAT TGGTTGACAG AACCGGCCAA CACGATATTT CTCAATTACG CAGTTTGCAA
GACTGGTTCT TGAAATTTGA GCTCCAAACT GTGCCTGGCG TGTCCGAAGT CTCGGCGCTA
GGGGGTATGG TGAAACAGTA TCAAGTGAAA GTAGATCCTG AAAAACTCCG CGCTTACGGT
ATACCGCTTT CTCATATTCA GATGGCAATA AAGCGAGGGA ATCAAGAAGT TGGGGCCTCT
GTAGTGGAGC TTGCAGAAGC TGAGTACATG GTTCGTGCTA CGGGGTATAT TTCTGATAAG
AAGGATATCG AAACTATTCC TCTTGGCGTC AATGACAATG GCACACCGCT TTTAATAAGG
GATATTGCCA CTGTAGATAT CGGTCCACAA ATGCGCCGCG GTATAGCAGA GCTAAACGGC
GAAGGGGAAA CAGTCGGCGG TATTGTCGTG ATGCGTTTTG GCGAGAATGC TCAAAAAACG
ATAGATGGCG TCAAAGCAAA ACTAGAGGAC TTAAAAAAAG GACTACCTGA TGGCGTTGAG
GTGGTCACTG TTTATGACCG TTCCGCATTA ATTGAAAGGG CCGTTGATAA CCTAGCTTCA
AAACTATTAG AAGAGTTTAT CGTAGTCGCT TTGGTATGTG TCGCCTTTCT TTTTCATGTT
CGGTCGTCAC TCGTCGCTAT CATCAGTATT CCTGTTGGGA TCATTACCGC GCTAATCGTT
ATGTATATGC AAGGTATCAA TGCCAATATC ATGTCGTTGG GCGGCATTGC TATTGCCATT
GGCGCCATGA GTGATGGTGC GATCGTTATG ATTGAAAATA TGCACAAACA CATGGAAAAG
ACGCCTCTTA CCAAGGAAAA TCGCTGGCAG GTTGTTATCG ATTCTGCGGT CGAAGTTGGA
CCTGCGTTAT TTTTCAGTTT GTTGATCATT ACGGTTAGTT TTGTACCTGT TTTTACGCTT
GAGGCCCAGG AAGGGAGGAT GTTTTCCCCT CTTGCTTATA CGAAAACATA TGCAATGGCT
GCATCAGCGG CACTTGCGAT TACACTGGTC CCAGTCTTAA TGGGGTATTT TGTACGTGGA
AAGGTGTTGC CTGAACACAA AAACCCAGTC AACAAGTTTT TAACGTTTTT ATACATACCG
ACGCTCAAGA CAGTTTTGCG CTTTCCAAAG TCAACGATGG TCGCAGCATT GATTGTCTTG
GCTATCGGGG TTTGGCCAAT TGATAAAATT GGTAGTGAAT TTATTCCCCC GCTTGACGAA
GGCGATTTGA TGTATATGCC GACCACCTAT GCCGGCATAT CAATCGGGAA GGCACGAGAG
CTTCTTCAAC AGACCAACAA ATTAATAAAA ACCGTACCAG AAGTAGAAAC GGTATTTGGC
AAAGTAGGGC GGGCGGATAC GGCGACGGAC CCCGCGCCAC TGACCATGAT TGAGACATTC
ATTCAATTGA AACCCAAAGA ACAATGGCGA GAAGGGATGA CCACGCAGGA CCTTATTAAA
GAGTTTGATG CAGTGGTCAA TTTACCGGGC TTAACCAACG CATGGGTGAT GCCAATAAAA
ACCCGAATTG ACATGCTTGC CACAGGAATT AAAACCCCTG TTGGGATTAA AATTGGTGGT
CCCGATCTAA TGGAAATTCA AAAAATCGGC CAACAAATTG AGTCAATATT AACTGACGTC
GATGGCACGG CTTCAGTGTA TTCTGAACGC GTCGCTGGCG GTCGCTACTT GAAAGTCGAC
ATTGATCGCG AAAAAGCCGC CCGATATGGG CTCAATATCG CTGATGTTCA GCAAATTGTC
TCTAGTGCAA TTGGCGGTGT TAACGTAACA CAGAGTGTAG AAGGGCTGGA GCGCTATCCA
GTAAATATTC GTTATCCGCA GTCATACCGA AGCTCTCCAG AGTCGCTTTC TTTGTTACCT
GTAGTGACAC CACAAGGAAA ACGTATAGCC TTAGCTGATG TTGCTGACGT CTACATCGAA
GACGGACCAC CGGGTATCAA GAGTGAAAAC GCGCGGCTCA ATGGATGGGT GTATGTTGAC
ATCGATGGTG TAGACATAGG CACGTATGTG GCTACCGCGC AGCAAGTTGT TGCTGAACAA
CTCGTTTTAC CCGCCGGCTA TTCAATTAAT TGGTCTGGCC AATACGAGTA TATGTTAAGG
GCAAAGGAGA AGCTCACTTA CGTTGTGCCT TTGACGCTCG CTATAATCGT TATTCTATTG
TACCTCAACT TCCGAAACTT CATTGAAGTG GCGATTATTA TGGGGACGTT GCCATTGTCG
ATGGTTGGCA GCATATGGCT TATGTACATC GAAGGCTTTA ATTTCTCCGT GGCCGTAGGC
GTAGGTTTCA TTGCCTTGGC CGGTGTCGCT GTAGAAATAG GAGTCATTAT GCTTGTATAT
CTCAATCATG AATATCAGGC ACTGATGGAT AGATGCAAAG AAGGGGGTAC CTTACCGAGC
GCCGAGATGT TGACCGAGGC AGTACTGCAC GGTGCAGGAT TGCGTGTTCG TCCCGTCATG
ATGACAACGG CCACTATCAT CTTTGGATTG CTGCCGGTTT TATATGGCTC TGGTACGGGG
TCCGAAGTCA TGAGTCGGAT TGCCGCGCCG ATGGTGGGAG GAATGGTTAG TGCGATTATT
CTGACACTAC TCATACTGCC TGCCATTTAT TTAATATGGC GCAAACAACA GCTTAAATAC
TTGGCTGTCG TTGCGTAA
|
|---|
| Protein sequence | MIEAVIRWSV SNRFFVLLAT IIIVGGGLVT MKNTPVDAIP DLSDVQVIIK TSYPGQAPQV
VEDQVTYPLT TAMLSVPGAQ TVRGYSFFGD SYVYIIFDDD TDLYWARSRV LEYLSQVAPN
LPENARPQLG PDATGVGWVY LYALVDRTGQ HDISQLRSLQ DWFLKFELQT VPGVSEVSAL
GGMVKQYQVK VDPEKLRAYG IPLSHIQMAI KRGNQEVGAS VVELAEAEYM VRATGYISDK
KDIETIPLGV NDNGTPLLIR DIATVDIGPQ MRRGIAELNG EGETVGGIVV MRFGENAQKT
IDGVKAKLED LKKGLPDGVE VVTVYDRSAL IERAVDNLAS KLLEEFIVVA LVCVAFLFHV
RSSLVAIISI PVGIITALIV MYMQGINANI MSLGGIAIAI GAMSDGAIVM IENMHKHMEK
TPLTKENRWQ VVIDSAVEVG PALFFSLLII TVSFVPVFTL EAQEGRMFSP LAYTKTYAMA
ASAALAITLV PVLMGYFVRG KVLPEHKNPV NKFLTFLYIP TLKTVLRFPK STMVAALIVL
AIGVWPIDKI GSEFIPPLDE GDLMYMPTTY AGISIGKARE LLQQTNKLIK TVPEVETVFG
KVGRADTATD PAPLTMIETF IQLKPKEQWR EGMTTQDLIK EFDAVVNLPG LTNAWVMPIK
TRIDMLATGI KTPVGIKIGG PDLMEIQKIG QQIESILTDV DGTASVYSER VAGGRYLKVD
IDREKAARYG LNIADVQQIV SSAIGGVNVT QSVEGLERYP VNIRYPQSYR SSPESLSLLP
VVTPQGKRIA LADVADVYIE DGPPGIKSEN ARLNGWVYVD IDGVDIGTYV ATAQQVVAEQ
LVLPAGYSIN WSGQYEYMLR AKEKLTYVVP LTLAIIVILL YLNFRNFIEV AIIMGTLPLS
MVGSIWLMYI EGFNFSVAVG VGFIALAGVA VEIGVIMLVY LNHEYQALMD RCKEGGTLPS
AEMLTEAVLH GAGLRVRPVM MTTATIIFGL LPVLYGSGTG SEVMSRIAAP MVGGMVSAII
LTLLILPAIY LIWRKQQLKY LAVVA
|
|---|
| |