Gene MADE_00315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00315 
Symbol 
ID6775443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp343798 
End bp344481 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content43% 
IMG OID642753744 
Productprobable two component response regulator transcription regulator protein 
Protein accessionYP_002124627 
Protein GI196155138 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAC TTGTAGTCGA AGACGAAGTA AAAACGGGCG ATTACATCAA ACAAGGGCTC 
ATTGAATCCG GCTTTGTTGT AGAATTAGTA AGGACTGGCC TGGATGGTCA CCACAAATCG
ATGATTGGTG ATTATGAATT AATCGTACTC GATGTAATGC TGCCCGACAT AGAAGGTTGG
AAAATCCTGT CTTCATTGAG AGAATCTGGT AAATTTACAC CCGTTCTTTT TTTAACCGCT
CGCGATCACG TTAATGACAG AGTCAAAGGA CTTGAGTTAG GCGCAGACGA TTATTTGGTT
AAACCGTTTG CTTTCGCGGA ACTCCTCGCA AGAGTGCGCA CCTTGATCAG GAGAGGGACG
TCTGTCCCTA ACAACACGTT ACACATTGCA GATTTGGAGC TTGATATCCC TTCTCGCGTT
GCGAAGCGCG GTGGCAAAGT AATCAATCTG ACGACTAAAG AGTTTACATT GCTTGAACTA
ATGGTCAGAC GTCAAGGTGA AGTATTGCCC CGTTCTTTGA TCGCCTCTCA GGTATGGGAC
ATGAATTTTG ACAGTGACAC GAATGTCATT GATGTCGCTA TCCGAAGATT GCGCGCAAAA
ATTGATGATG ACTTTCCTGT AAAGCTAATT CAAACTGTCA GGGGGATGGG CTATAAAATG
AGTGTAGATG ATAGTAACGA ATAA
 
Protein sequence
MKILVVEDEV KTGDYIKQGL IESGFVVELV RTGLDGHHKS MIGDYELIVL DVMLPDIEGW 
KILSSLRESG KFTPVLFLTA RDHVNDRVKG LELGADDYLV KPFAFAELLA RVRTLIRRGT
SVPNNTLHIA DLELDIPSRV AKRGGKVINL TTKEFTLLEL MVRRQGEVLP RSLIASQVWD
MNFDSDTNVI DVAIRRLRAK IDDDFPVKLI QTVRGMGYKM SVDDSNE