| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00205 |
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| Symbol | dapF |
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| ID | 6779190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 222248 |
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| End bp | 223057 |
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| Gene Length | 810 bp |
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| Protein Length | 269 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642753633 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002124517 |
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| Protein GI | 196155028 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCACGGTT TGGGTAACGA TTTCATGGTA ATTGATAACG TTACTCAAAA CGTATTTTTC
TCTAAAGAAA AAATCCAACA ACTGGCTGAC CGAAATTTCG GTATCGGCTT CGACCAGCTG
TTGATGGTTG AACCGCCTTA CGATCCTGAA CAAGACTTTC ATTATCGTAT TTTCAATGCC
GATGGCTCTG AAGTAGAGCA GTGCGGTAAT GGGGCACGTT GCTTTGCGCG CTTTGTTAAG
CAAAAGGGCT TGATAAACCG CAACAAAATT GTAGTGAGTA CCAAAGCAGG CAAAATGGTG
CTTTACCTAG AGAAAGACGG GCAAGTTACC GTCAATATGG GTAAGCCAGA GTTCGAACCG
GCTAACATTC CCCTTAAAGC CAACAAGCAA GAAAATACTT ATATCTTACG CGTCGGCGAA
AGCACCTTAT TCATTGGCGC AGCGTCAATG GGCAACCCTC ATTGCGTAAT GGAAGTTGAC
GATGTCGATA CCGCCAACGT CGCTGAAATT GGCCCGCTAG TTGAAAAGCA TGAACGCTTT
TCAGAAGGCG TGAACGTAGG CTTTATGCAA ATCATCAACG ACTCGCATAT TAAGCTAAGA
GTATTTGAGC GTGGTTCGGG TGAAACCCTT GCTTGTGGAA GCGGTGCGTG CGCAGCAGTT
GCAATTGGTC AAATACAGGG TAAATTAAGT AAAGACGTGC GGGTAGACTT ACCCGGGGGC
AGTTTACGTA TACGCTGGCC CGGCCCAGAT AATGTATTAA AAATGACAGG GCCTGCCGAA
CACGTATATG ACGGACACAT AAATCTATGA
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| Protein sequence | MHGLGNDFMV IDNVTQNVFF SKEKIQQLAD RNFGIGFDQL LMVEPPYDPE QDFHYRIFNA
DGSEVEQCGN GARCFARFVK QKGLINRNKI VVSTKAGKMV LYLEKDGQVT VNMGKPEFEP
ANIPLKANKQ ENTYILRVGE STLFIGAASM GNPHCVMEVD DVDTANVAEI GPLVEKHERF
SEGVNVGFMQ IINDSHIKLR VFERGSGETL ACGSGACAAV AIGQIQGKLS KDVRVDLPGG
SLRIRWPGPD NVLKMTGPAE HVYDGHINL
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