Gene MADE_00193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00193 
Symbol 
ID6775338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp206299 
End bp209136 
Gene Length2838 bp 
Protein Length945 aa 
Translation table11 
GC content45% 
IMG OID642753621 
Productpredicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
Protein accessionYP_002124505 
Protein GI196155016 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTATTAG CCCGGCTAAC AAAGTATGTA TCAGCTTTGC TCATTAGTTG GGTAATGTTT 
AGCTTTCATG TTTTCGCGAG TAGTCCCCTG GTTATCAATG AATCGTTCGA GCGAGACATT
ATTAATCATT TCGCCCAGCG TTTAGAAGCG CCGAGCAGCA CGACTTACTT TGATATTCTA
AGCGGCAGCG CCGTTGCCCC CTCGCCAGGA CCTAACACTA ATAAGCGGGT GTGGTATTCA
ACATCGCTTC AACACACTGG CTACAGCCCT ATTCCCTTAG TGCTTAATAT CGATAGACTA
AACATAGACG ACCTACAAAT TTACTTGCTC GACGACAGTC AGCGAATTAT CAAATCTTAT
CGCTATCAGG CCGGTAAAGG GGACTACTCG CTGCGCCAAC CCCTGCCAAA TATACGCCTC
GCCTTTACAC TTCAGCCCTA TCAAGATGCG AGACTGTTAA TTGCTGTTAA AGATGACGGC
CTTAAGTATT TTCCAATCGC GCTATGGGAA AGAGATCGGC TTCATCAGCA CGATACCAAT
ATGCTTACGC TATTAGGTGC AGTAGCAGGC GTGATGTCGC TTATCGCCTT TTATTTTTTA
TTTTCCTATT TATATCAGCG TATTCCTTCT CGGTTCTGGC TCACTATGAC AACCTTAGTC
ATTATCGCAC TGCTTTTTAT AACCGAAGGT GGCTTAGCCG TATGGCCCAA CCTAACGAAT
GCCAGCGAGA ACTTTTTCGC CGTATGCTTC GGCATGCTTT TACTGTGCGT TGGCAAAGTA
ACCCATCATC TGTTTCCTCG CGTGCCTTTT TTATTGCGTG CAATTAATTA TGCTGCGCCC
ATCGCCGCTA CCATTTACTG CTTAACCGTT GATGCCTATA CCACAACAAT ATCTCTGCTA
CTGCTTATAG CGGTTATGGG CCTCTACCAC GTGGCACTAG CCCTTTTATT TAAGGACAAG
GTCAGCCGTG TGGTTAGCAC TACCTACGCA TTAGCATGGC TGTCGTTTTT CGCGTTCTAT
GCCTTAGTCA CTCTGAATTT ATTTAGCGAC CTTATTTATA CGGTTGATGT TGCCATGGGC
ATGCTGCTGT TCATCACCTT GGGGTTCTTG TGTCTAGGGT TCTCTGTCAT TACCAAGGAG
CAAGCCAAAA ATCAGGATCA GCTATCTACG CAAGCAGAGA CTATTTCAAA CTTAAACCAC
TTCTATGATC TATTCAGAAA TTCAGCCGAG GGACATTACA CCTCTACCTG GGATGGAAAG
CTAAAGTCGG TAAACCCTGC CACGTGTAAG GTATTTGGGT ACGAGAACGA AGAGGAAATG
CTTGCCGATG CTGCCAGCAC CAAAGTTTTC TACGCCTCGC CAGAAGACAG ACAAGTGCTA
CTTGGCGAGG TCTCTCAACA AGGTCATGTA ACGGGTAAAG AAATTCGTGG AAAACGCAAA
GATGGTAGTG AGTTTTGGTT CTCACTGTCA TGCCAGATGA GAGAAAGCGA CGACGGTAAT
TTCCTTTACG GTTCTATCAT TGATATTACT GAGAAAAAAC AGTCTGACTT AAGCCTTCAA
TACTTAGCTA CTCACGATTC GCTTACCGGG GTATACAACA GACGCCAGTT TGAAACTGAC
TTTAGAGAAA AGCTCTCACA AAAAAGCGAT ATTCCGGTTT GCATACTTTT TATGGATTTA
GACCGCTTCA AAGTTGTCAA TGACACCTGC GGCCATAAAG CCGGCGACGT GTTGATAAAA
GACATCGCCC GCTTAATTGA GAACACCTTG CATGATGAAG CGCTGCTAGC GCGACTCGGT
GGCGATGAGT TCGGCGTCAT TTATACAGAC GTTGATGCTA ACGAAGTATA CCTAAACGCG
GTAAAAATAC TAAATGCGGT ACAGGCCTAT CGATTTATGT GGGATAACCG CATTTTCAAT
TTGGGCGTGA GTATAGGCAT GGTGGTGTGT GAAGACACAG AGGTAAACGC AGGACAGTAT
TTGAGTATGG CTGACGCCGC CTGCTATTTC GCGAAAGAAC AAGGCAGAAA TCAAGTTCAC
AGATACAATA AAGACGACGA AAGTATGCAG CGTTATCAGC GAGAGCTCGA CTGGGTATCG
TCGATTAACA ACGCATTAGA AGAGGGTCGC TTCGAGCTTT ATTACCAGTC ACTAAGGCCA
TTAAATCAAA CCACCGACGG TCACTATTAC GAGGTGTTAT TAAGACTTAG AGAAAAGAAC
GGTAACTTAG TAGAGCCCGC TAACTTTTTG CCTACCGCAG AACGTTTTGA GATGAATGTG
AACGTCGATA AATGGGTGGT GACCAATACG TTTAAATGGC TATCGGAAAA CCCTGAACAC
CTTGCTGAGC TTAAGCGTTG CAGCATCAAC CTTAACTGTC ACTCTTTGGC AGATAGAGAC
TTCACCTTAT TCATATTAAA TGCCTTTGAA ACCTTTAATA TTCCTTACAA CAAGGTGTGT
TTTGAAGTCA TCGAATCGGT CGCCATTATC AAAATGGAAG ACACCCTTTC TTTTATGCGC
ACCTTCAACC GACTGGGATG CTCATTTGCT CTTGATGACT TTGGCAGCGG GTTCTCTTCT
TACAGCTACT TAAAAAGCTT GCCGGTGAAC CAGGTTAAGA TTGACGGAAT GTTTATCAAA
GATATGCTCA ACGACAGTGT AGACACCGCC ATGGTCGCGT CAATTAATGA TGTTGCGAAA
GCGATGGGCA TGCAGACCGT TGGCGAATTT GTTGAAAATG AAGGAACTCT GGCGCAGTTA
GGCAAAATGG GTGTCGACTT TGCCCAAGGG TACGGCGTTG CAAAACCTGC CCCACTACGT
GATTTTAAAC CCCTGTAA
 
Protein sequence
MVLARLTKYV SALLISWVMF SFHVFASSPL VINESFERDI INHFAQRLEA PSSTTYFDIL 
SGSAVAPSPG PNTNKRVWYS TSLQHTGYSP IPLVLNIDRL NIDDLQIYLL DDSQRIIKSY
RYQAGKGDYS LRQPLPNIRL AFTLQPYQDA RLLIAVKDDG LKYFPIALWE RDRLHQHDTN
MLTLLGAVAG VMSLIAFYFL FSYLYQRIPS RFWLTMTTLV IIALLFITEG GLAVWPNLTN
ASENFFAVCF GMLLLCVGKV THHLFPRVPF LLRAINYAAP IAATIYCLTV DAYTTTISLL
LLIAVMGLYH VALALLFKDK VSRVVSTTYA LAWLSFFAFY ALVTLNLFSD LIYTVDVAMG
MLLFITLGFL CLGFSVITKE QAKNQDQLST QAETISNLNH FYDLFRNSAE GHYTSTWDGK
LKSVNPATCK VFGYENEEEM LADAASTKVF YASPEDRQVL LGEVSQQGHV TGKEIRGKRK
DGSEFWFSLS CQMRESDDGN FLYGSIIDIT EKKQSDLSLQ YLATHDSLTG VYNRRQFETD
FREKLSQKSD IPVCILFMDL DRFKVVNDTC GHKAGDVLIK DIARLIENTL HDEALLARLG
GDEFGVIYTD VDANEVYLNA VKILNAVQAY RFMWDNRIFN LGVSIGMVVC EDTEVNAGQY
LSMADAACYF AKEQGRNQVH RYNKDDESMQ RYQRELDWVS SINNALEEGR FELYYQSLRP
LNQTTDGHYY EVLLRLREKN GNLVEPANFL PTAERFEMNV NVDKWVVTNT FKWLSENPEH
LAELKRCSIN LNCHSLADRD FTLFILNAFE TFNIPYNKVC FEVIESVAII KMEDTLSFMR
TFNRLGCSFA LDDFGSGFSS YSYLKSLPVN QVKIDGMFIK DMLNDSVDTA MVASINDVAK
AMGMQTVGEF VENEGTLAQL GKMGVDFAQG YGVAKPAPLR DFKPL