Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_00193 |
Symbol | |
ID | 6775338 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 206299 |
End bp | 209136 |
Gene Length | 2838 bp |
Protein Length | 945 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642753621 |
Product | predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
Protein accession | YP_002124505 |
Protein GI | 196155016 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATTAG CCCGGCTAAC AAAGTATGTA TCAGCTTTGC TCATTAGTTG GGTAATGTTT AGCTTTCATG TTTTCGCGAG TAGTCCCCTG GTTATCAATG AATCGTTCGA GCGAGACATT ATTAATCATT TCGCCCAGCG TTTAGAAGCG CCGAGCAGCA CGACTTACTT TGATATTCTA AGCGGCAGCG CCGTTGCCCC CTCGCCAGGA CCTAACACTA ATAAGCGGGT GTGGTATTCA ACATCGCTTC AACACACTGG CTACAGCCCT ATTCCCTTAG TGCTTAATAT CGATAGACTA AACATAGACG ACCTACAAAT TTACTTGCTC GACGACAGTC AGCGAATTAT CAAATCTTAT CGCTATCAGG CCGGTAAAGG GGACTACTCG CTGCGCCAAC CCCTGCCAAA TATACGCCTC GCCTTTACAC TTCAGCCCTA TCAAGATGCG AGACTGTTAA TTGCTGTTAA AGATGACGGC CTTAAGTATT TTCCAATCGC GCTATGGGAA AGAGATCGGC TTCATCAGCA CGATACCAAT ATGCTTACGC TATTAGGTGC AGTAGCAGGC GTGATGTCGC TTATCGCCTT TTATTTTTTA TTTTCCTATT TATATCAGCG TATTCCTTCT CGGTTCTGGC TCACTATGAC AACCTTAGTC ATTATCGCAC TGCTTTTTAT AACCGAAGGT GGCTTAGCCG TATGGCCCAA CCTAACGAAT GCCAGCGAGA ACTTTTTCGC CGTATGCTTC GGCATGCTTT TACTGTGCGT TGGCAAAGTA ACCCATCATC TGTTTCCTCG CGTGCCTTTT TTATTGCGTG CAATTAATTA TGCTGCGCCC ATCGCCGCTA CCATTTACTG CTTAACCGTT GATGCCTATA CCACAACAAT ATCTCTGCTA CTGCTTATAG CGGTTATGGG CCTCTACCAC GTGGCACTAG CCCTTTTATT TAAGGACAAG GTCAGCCGTG TGGTTAGCAC TACCTACGCA TTAGCATGGC TGTCGTTTTT CGCGTTCTAT GCCTTAGTCA CTCTGAATTT ATTTAGCGAC CTTATTTATA CGGTTGATGT TGCCATGGGC ATGCTGCTGT TCATCACCTT GGGGTTCTTG TGTCTAGGGT TCTCTGTCAT TACCAAGGAG CAAGCCAAAA ATCAGGATCA GCTATCTACG CAAGCAGAGA CTATTTCAAA CTTAAACCAC TTCTATGATC TATTCAGAAA TTCAGCCGAG GGACATTACA CCTCTACCTG GGATGGAAAG CTAAAGTCGG TAAACCCTGC CACGTGTAAG GTATTTGGGT ACGAGAACGA AGAGGAAATG CTTGCCGATG CTGCCAGCAC CAAAGTTTTC TACGCCTCGC CAGAAGACAG ACAAGTGCTA CTTGGCGAGG TCTCTCAACA AGGTCATGTA ACGGGTAAAG AAATTCGTGG AAAACGCAAA GATGGTAGTG AGTTTTGGTT CTCACTGTCA TGCCAGATGA GAGAAAGCGA CGACGGTAAT TTCCTTTACG GTTCTATCAT TGATATTACT GAGAAAAAAC AGTCTGACTT AAGCCTTCAA TACTTAGCTA CTCACGATTC GCTTACCGGG GTATACAACA GACGCCAGTT TGAAACTGAC TTTAGAGAAA AGCTCTCACA AAAAAGCGAT ATTCCGGTTT GCATACTTTT TATGGATTTA GACCGCTTCA AAGTTGTCAA TGACACCTGC GGCCATAAAG CCGGCGACGT GTTGATAAAA GACATCGCCC GCTTAATTGA GAACACCTTG CATGATGAAG CGCTGCTAGC GCGACTCGGT GGCGATGAGT TCGGCGTCAT TTATACAGAC GTTGATGCTA ACGAAGTATA CCTAAACGCG GTAAAAATAC TAAATGCGGT ACAGGCCTAT CGATTTATGT GGGATAACCG CATTTTCAAT TTGGGCGTGA GTATAGGCAT GGTGGTGTGT GAAGACACAG AGGTAAACGC AGGACAGTAT TTGAGTATGG CTGACGCCGC CTGCTATTTC GCGAAAGAAC AAGGCAGAAA TCAAGTTCAC AGATACAATA AAGACGACGA AAGTATGCAG CGTTATCAGC GAGAGCTCGA CTGGGTATCG TCGATTAACA ACGCATTAGA AGAGGGTCGC TTCGAGCTTT ATTACCAGTC ACTAAGGCCA TTAAATCAAA CCACCGACGG TCACTATTAC GAGGTGTTAT TAAGACTTAG AGAAAAGAAC GGTAACTTAG TAGAGCCCGC TAACTTTTTG CCTACCGCAG AACGTTTTGA GATGAATGTG AACGTCGATA AATGGGTGGT GACCAATACG TTTAAATGGC TATCGGAAAA CCCTGAACAC CTTGCTGAGC TTAAGCGTTG CAGCATCAAC CTTAACTGTC ACTCTTTGGC AGATAGAGAC TTCACCTTAT TCATATTAAA TGCCTTTGAA ACCTTTAATA TTCCTTACAA CAAGGTGTGT TTTGAAGTCA TCGAATCGGT CGCCATTATC AAAATGGAAG ACACCCTTTC TTTTATGCGC ACCTTCAACC GACTGGGATG CTCATTTGCT CTTGATGACT TTGGCAGCGG GTTCTCTTCT TACAGCTACT TAAAAAGCTT GCCGGTGAAC CAGGTTAAGA TTGACGGAAT GTTTATCAAA GATATGCTCA ACGACAGTGT AGACACCGCC ATGGTCGCGT CAATTAATGA TGTTGCGAAA GCGATGGGCA TGCAGACCGT TGGCGAATTT GTTGAAAATG AAGGAACTCT GGCGCAGTTA GGCAAAATGG GTGTCGACTT TGCCCAAGGG TACGGCGTTG CAAAACCTGC CCCACTACGT GATTTTAAAC CCCTGTAA
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Protein sequence | MVLARLTKYV SALLISWVMF SFHVFASSPL VINESFERDI INHFAQRLEA PSSTTYFDIL SGSAVAPSPG PNTNKRVWYS TSLQHTGYSP IPLVLNIDRL NIDDLQIYLL DDSQRIIKSY RYQAGKGDYS LRQPLPNIRL AFTLQPYQDA RLLIAVKDDG LKYFPIALWE RDRLHQHDTN MLTLLGAVAG VMSLIAFYFL FSYLYQRIPS RFWLTMTTLV IIALLFITEG GLAVWPNLTN ASENFFAVCF GMLLLCVGKV THHLFPRVPF LLRAINYAAP IAATIYCLTV DAYTTTISLL LLIAVMGLYH VALALLFKDK VSRVVSTTYA LAWLSFFAFY ALVTLNLFSD LIYTVDVAMG MLLFITLGFL CLGFSVITKE QAKNQDQLST QAETISNLNH FYDLFRNSAE GHYTSTWDGK LKSVNPATCK VFGYENEEEM LADAASTKVF YASPEDRQVL LGEVSQQGHV TGKEIRGKRK DGSEFWFSLS CQMRESDDGN FLYGSIIDIT EKKQSDLSLQ YLATHDSLTG VYNRRQFETD FREKLSQKSD IPVCILFMDL DRFKVVNDTC GHKAGDVLIK DIARLIENTL HDEALLARLG GDEFGVIYTD VDANEVYLNA VKILNAVQAY RFMWDNRIFN LGVSIGMVVC EDTEVNAGQY LSMADAACYF AKEQGRNQVH RYNKDDESMQ RYQRELDWVS SINNALEEGR FELYYQSLRP LNQTTDGHYY EVLLRLREKN GNLVEPANFL PTAERFEMNV NVDKWVVTNT FKWLSENPEH LAELKRCSIN LNCHSLADRD FTLFILNAFE TFNIPYNKVC FEVIESVAII KMEDTLSFMR TFNRLGCSFA LDDFGSGFSS YSYLKSLPVN QVKIDGMFIK DMLNDSVDTA MVASINDVAK AMGMQTVGEF VENEGTLAQL GKMGVDFAQG YGVAKPAPLR DFKPL
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