Gene MADE_00029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00029 
Symbol 
ID6779073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp30867 
End bp31541 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content44% 
IMG OID642753454 
Productouter membrane protein OmpW 
Protein accessionYP_002124343 
Protein GI196154854 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.25785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCAAAC ACACTTTATC TGCACTTTGT CTTACCCTTG CTGCACTTTC ACCTTTAGCT 
AGCGCTCATC AGCAGGGCGA TTGGATTGTT CGAGGCGGTC TGACTACCGT TGCTCCTGAC
GAATCTACTT CTAACATCGT CGCTGGTGGC AATGATCTTG GTGTTGCCCT TAATATTGAT
AACGATACCC AGCTAGGTTT GAACGTTGCA TACTTCATTA CTGATAAAAT TAATATCGAA
CTGCTTGCGG CAACGCCCTT TAAGCACGAC GTGAACTTCT CTGTTGCCGA CCCGTTAGGT
ACGGGAAATC AGCTTGGTGA AGTTACTCAC TTACCGCCAA CACTCACCGC TAACTATTAC
TTCAACGATG CAAGTTCAGC CTTTCAGCCA TATATTGGTG CGGGTATTAA CTACACCTTT
ATCTTTGATG AGGAATTTAC TGGCGCAAAC GAGGATGCAG GCTTAAGCGA CCTATCACTC
GATAACTCAT TTGGTTTATC AGCTCAAGTG GGTATGGACT ACCAAATTGA TACAAAGTGG
CATGTAAATG CATCAGTACG TTTCATCGAT ATTGATACTG AAGCCACGTT TAAGGTTGGT
GATGCCGCAG GTAAGGTGAG TGATATTGAA ATAGACCCTT GGGTGTACAC CATATCGGTA
GGCTATACCT TTTAA
 
Protein sequence
MRKHTLSALC LTLAALSPLA SAHQQGDWIV RGGLTTVAPD ESTSNIVAGG NDLGVALNID 
NDTQLGLNVA YFITDKINIE LLAATPFKHD VNFSVADPLG TGNQLGEVTH LPPTLTANYY
FNDASSAFQP YIGAGINYTF IFDEEFTGAN EDAGLSDLSL DNSFGLSAQV GMDYQIDTKW
HVNASVRFID IDTEATFKVG DAAGKVSDIE IDPWVYTISV GYTF