Gene MADE_00026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00026 
Symbol 
ID6775536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp28532 
End bp29074 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content44% 
IMG OID642753451 
Productputative DNA topoisomerase; C4 zinc finger domain protein 
Protein accessionYP_002124340 
Protein GI196154851 
COG category[L] Replication, recombination and repair 
COG ID[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.979769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAAAA TAGACCACTC ACTTTTTTCT GCTCACGAGC ACGCTCTAGA AGATAATTTT 
GGAGACTGTC CCGAATGTGG CAAGCCCCTT CATATTAAGA ACAGCAAATC AGGGCCGTTT 
TTAGGCTGTA CTGGCTACCC TGATTGTAAT TTCAGTAAAC CGCTTCACGA TACCCAAACC 
ACGGTCCTTA AAACGCTAGA CGGTATGGCC TGCCCAAAGT GCGCCTGCGA TCTAGCCATT 
AAAAAGGGTC GGTTTGGCAT GTTCATAGGC TGTACCAACT TTCCCTCATG CCATCACATT 
GAGCCTATCA AAGAAAAAGA AGACACCTTA GTTGACTGCC CAAAGTGTAA GAAAGGGCAT 
TTAATTTCAC GCACCAATAA ATACGGCAAA CAGTTTTTTG CGTGTAACCA TTATCCGCAA 
TGCCGATATG TGCTAAATTT CACGCCTGTA AATGAAAGCT GCCCAGACTG TGGATGGACA 
GTGTTGATAG ATAAAAAAGG GCAAATTCAG TGCCCGCAGC CAACTTGTGG CTACAAAAAG 
TAA
 
Protein sequence
MSKIDHSLFS AHEHALEDNF GDCPECGKPL HIKNSKSGPF LGCTGYPDCN FSKPLHDTQT 
TVLKTLDGMA CPKCACDLAI KKGRFGMFIG CTNFPSCHHI EPIKEKEDTL VDCPKCKKGH 
LISRTNKYGK QFFACNHYPQ CRYVLNFTPV NESCPDCGWT VLIDKKGQIQ CPQPTCGYKK