Gene HY04AAS1_1612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHY04AAS1_1612 
Symbol 
ID6744444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHydrogenobaculum sp. Y04AAS1 
KingdomBacteria 
Replicon accessionNC_011126 
Strand
Start bp1529552 
End bp1533157 
Gene Length3606 bp 
Protein Length1201 aa 
Translation table11 
GC content36% 
IMG OID642751432 
ProductDNA polymerase III, alpha subunit 
Protein accessionYP_002122271 
Protein GI195953981 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00506055 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGATT TTGTGCATCT TCATCTTCAC ACCCAATATT CGCTTTTGGA CGGAGCTATA 
AAGATAAAGG ATTTGGCTAA AAAGGCAAAG GAATACGGCT ATAAGGCTGT GGCTATAACG
GATCATGGTA ACCTTTTTGG TACTATGAGC TTTTACAAAG AGATGAAGGC AAACGGTATA
AAGCCCATTA TAGGTATGGA AGCTTACTTT ACCACAGGAA AAAGAACTGA GCATAAAGGA
AAAGGTTCTG AAGATAACAT AACAGATAGA ATAAACCACC ATATCATACT TTTGGCAAAA
AACGACACTG GGCTTAAAAA CCTCATGAAG CTTTCTTCTA TAGCTTTTAT TGAAGGCTTT
TACTATAAAC CAAGGATAGA TTATGAAGTG TTAGAGCAGC ATGCGGAAGG TCTAATCGCT
TTGACGGCCT GTCTTAAGGG AGTGCCTACT TTTTACGCAG CTCAAGGCAA CGAAGAGATG
GCTTATAATT GGGTTAAAAA GTTTAAAGAT ATCTTTGGGG ATGATCTTTA TTTAGAGCTT
CAATCAAATC ATATACCAGC TCAGGAAACC GCCAATAAAA CCCTTATAGA TATAGCCAAA
AGATACAACG TAAAGTTTGC GGCCACCAAC GATTGTCATT ACCTTTTGGA AGAAGATTTG
AGGGCTCACA ACGTGTTGAT GGCAATTCAG ATGAAAAAAA CACTTCAGGA GCTTGGAGAA
GATGCTTTTG GGCACTATGA TGGTATGCAC TTTGCCTCAT ACGAGGAGAT GGTAAAGAAA
TTTGAAGGAA AGTGGAGTGA GTGGGAAAAA GCGCTTTTAA ACACTGTTGA AATATCAGAA
AAAGTTGCAG ATTCTTTAAG CATATTTGAA GACAAATCTT ACAAGTTTCC TGAGTTTTTT
AAAGGTGATG ATATAAATGT CAATATATCT TCTTACCTTA GAAATTTAGC CGTTGAGGGT
CTTAAAAGCC GTATACAAAA ATCTCAAATA AGCAAAAATA TACCAGAAAA AGAGTACTGG
GACAGACTAA ATTATGAATT AGAAGTAATA CAAAATATGG GTTTTGATAG TTATTTCTTG
ATAGTATCGG ATTTTATAAA CTGGTCAAAA TCAAACAACA TACCCGTGGG TCCTGGAAGA
GGTTCTGCGG CTGGGTCTTT GGTGGCTTTT GCTCTAAACA TTACAGACGT TGATCCGTTA
AAGCACGGAC TTATCTTCGA AAGATTTTTA AATCCAGAGC GTATATCTAT GCCAGATATA
GATGTAGACT TTTGCATGGA CAACCGGGAT AAGGTTATAG AGTATGTAAA AGAAAAATAC
GGCAAAGATT CTGTAGCTCA GATCATTACT TACAATACGA TGAAAGCTAA ACAAACCCTT
AGAGATGTGG CAAGGGCCAT GGGTATGGCT TACAAAGACG CCGATGTACT AGCAAAACTT
ATACCTCAAG GCAACGTCCA AGGTACTTGG CTAAGCCTTG AAGAGATGTA TATAACGCCC
ATAGAAGAGT TGATGGAGCG TTATGGACAC AGAGGAGATA TTGAAGATAA TGTAAAAAAA
TTTAGAGACC TTGCAAAAAA AGACCCTCAG ATAAAAGAGC TTGTGGAAAT ATCTATAAAA
CTTGAGGGTC TTACAAGGCA TACATCTTTG CATGCTGCTG GTATTGTGAT AGCTCCAAAA
CCCCTTATAG AGTTGGCACC TTTGTATCTT GATAAATCGG TAAAAGATGA TACTGGCAAC
ATAGCTACCC AATACGATAT GGCTCATTTA GAAGAGCTTG GGCTTGTCAA AATGGACTTT
CTCGGATTAA AAACGCTTAC AGAGCTATGG AAGATGAAAG AGCTTGTAAA ACAAAACAAA
GGTGTAGATA TTGATTTCTT GTCTTTGGAT TTTAACAACA AAGAAATTTA CGAATTTTTA
GCTACCGGTG AAACGATAGG GGTGTTTCAA CTGGAATCAA AGGGCATGAG GGAGCTTATA
AAACGTTTAA AACCAGATAG ATTTGAAGAT ATTGTAGCCG CTTTAGCCCT TTATAGACCA
GGTCCTATAA AAAGCGGGAT GGTAGATAAA TTTATAAATA GAAAACTTGG TAAAGAAAAA
GTTGTATACG AATTTGAAGA GCTTGAAGAG GTGCTAAAAG AAACTTATGG TCTCATTGTT
TATCAAGAGC AGATCATGTT TATATCAAAC ATTCTTGCTG GGTTTACCAT GGGAGAGGCA
GATAATTTGA GAAAGGCTAT AGGTAAGAAA AAGGCTGATC TCATGGCAAA GATAAAAGAT
GATTTCATAA GAAGAAGCTG TGAAAGAGGC TATCCTAAGG ATAAAATAGA AAAACTTTGG
TCTGAAATAG AGGAGTTTGC CTCTTATTCT TTCAACAAAT CTCACTCTGT GGCTTACGGT
TACATATCTT TTTGGACTGC TTACGTGAAG CTTTACTATC CAGATGAGTT TTATGCTGTG
AAATTTTCTA CAGAGAACTC CGATAAGAAG TTTATAAACC TTTTAAAAGA TGCGAAGTCT
TTTGGTATAA AAGTATTACC TCCAGATGTA AACAAATCCG ATGTAGATTT TAAGATAGAA
GTTCCAAGAC ACATAAGGTT TGGGCTTGGA AGAATAAAGG GTGTTGGTGA GGATACCGCA
AGACATATAA AATCTATGCA AGAAAAAATT GGAAGAGACT TTCTAAGTTT TCAAGATTTT
ACCAAAAACA CAGACAATAG GAAAGTGAAT AAAAAAGTTT TAGAAGCTCT TTCAAAAGCA
GGGGCTTTTG ATAGTCTTAT AGAAAAAAGC GGTTATAAAA ATAGAGAAGA TTTTCTCTCA
AGGCTTTTGA ATTCTCAGGA TATATCAAGC ATAGCCCAGA GGTCGTTGTT TGGTATAAAA
GCCTCGAAAT CCACTGAGCA GATGGAACAA AGCTCTTCTA TAGATATATT AAAATTAGAA
AAGGAGGTTC TTGGTTTTTA TATATCTGGG CATCCACTGG ACAAATACAG CTGGATTTTA
TCTCACAACA AAGACATAAC AAATATAGAA GATATAGATT TTGACAATAT GCCAAACCAA
GCCATAGACA GCGAGGCTGG GCAAAACGCA TCGGCGGAAT ATACGATTGT GGGTGTTATA
AGCGATTTAC AGATTAAAAA AACCAAAAAT GGTTCTTACA TGGCTATTTT TAACCTTGTG
GATAAAACGG ATATTGTTGA AGTTGTGGTT TTCCCGGATA GGTATGCATC TTCTGAAGGT
ATTATAAAAG AAGATGAAGT GGTGGTGGTA AAGGGTGTTT TAGACATAGA CATTGAAAAT
GAAAACCTTA AGATAGTGGC AAATGATCTT TATTCTATAG ATTCTTTGCT AAATCAATAC
AACACGCTAA CTCTTAAGAT AGATGAGGAA AAAGCGAAAA ACGGCTTTTT AGAAAAGCTT
AAATCTATGC TGGACAAATA TACGCCTAAG ACTAACGAAG ATGTTATGAA AACTCAAAAA
GTTGTATTGG AACTAGACGT TAGCTCCTAT AGGGCTATAG TACAAACCTC CAAGGATGTG
GTGCTTTCAA AAACCCTCAT AGAAGAACTC AGTAAATACG GTATAGAATT TTCTTTGGCA
TCTTAA
 
Protein sequence
MKDFVHLHLH TQYSLLDGAI KIKDLAKKAK EYGYKAVAIT DHGNLFGTMS FYKEMKANGI 
KPIIGMEAYF TTGKRTEHKG KGSEDNITDR INHHIILLAK NDTGLKNLMK LSSIAFIEGF
YYKPRIDYEV LEQHAEGLIA LTACLKGVPT FYAAQGNEEM AYNWVKKFKD IFGDDLYLEL
QSNHIPAQET ANKTLIDIAK RYNVKFAATN DCHYLLEEDL RAHNVLMAIQ MKKTLQELGE
DAFGHYDGMH FASYEEMVKK FEGKWSEWEK ALLNTVEISE KVADSLSIFE DKSYKFPEFF
KGDDINVNIS SYLRNLAVEG LKSRIQKSQI SKNIPEKEYW DRLNYELEVI QNMGFDSYFL
IVSDFINWSK SNNIPVGPGR GSAAGSLVAF ALNITDVDPL KHGLIFERFL NPERISMPDI
DVDFCMDNRD KVIEYVKEKY GKDSVAQIIT YNTMKAKQTL RDVARAMGMA YKDADVLAKL
IPQGNVQGTW LSLEEMYITP IEELMERYGH RGDIEDNVKK FRDLAKKDPQ IKELVEISIK
LEGLTRHTSL HAAGIVIAPK PLIELAPLYL DKSVKDDTGN IATQYDMAHL EELGLVKMDF
LGLKTLTELW KMKELVKQNK GVDIDFLSLD FNNKEIYEFL ATGETIGVFQ LESKGMRELI
KRLKPDRFED IVAALALYRP GPIKSGMVDK FINRKLGKEK VVYEFEELEE VLKETYGLIV
YQEQIMFISN ILAGFTMGEA DNLRKAIGKK KADLMAKIKD DFIRRSCERG YPKDKIEKLW
SEIEEFASYS FNKSHSVAYG YISFWTAYVK LYYPDEFYAV KFSTENSDKK FINLLKDAKS
FGIKVLPPDV NKSDVDFKIE VPRHIRFGLG RIKGVGEDTA RHIKSMQEKI GRDFLSFQDF
TKNTDNRKVN KKVLEALSKA GAFDSLIEKS GYKNREDFLS RLLNSQDISS IAQRSLFGIK
ASKSTEQMEQ SSSIDILKLE KEVLGFYISG HPLDKYSWIL SHNKDITNIE DIDFDNMPNQ
AIDSEAGQNA SAEYTIVGVI SDLQIKKTKN GSYMAIFNLV DKTDIVEVVV FPDRYASSEG
IIKEDEVVVV KGVLDIDIEN ENLKIVANDL YSIDSLLNQY NTLTLKIDEE KAKNGFLEKL
KSMLDKYTPK TNEDVMKTQK VVLELDVSSY RAIVQTSKDV VLSKTLIEEL SKYGIEFSLA
S