| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1405 |
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| Symbol | |
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| ID | 6744230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | + |
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| Start bp | 1319290 |
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| End bp | 1322658 |
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| Gene Length | 3369 bp |
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| Protein Length | 1122 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 642751222 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002122068 |
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| Protein GI | 195953778 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000520478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAATA ATAAGATATT AAACGATATA TTTAAATACA AAAATATAGC TCTATGGTTT
TTTCTGGCTT TTGCATTTAT ATTTTTTAGC TTAGGTTTAA ATTTGTTTTA TATAAACAAA
TACAAAGAAA ACACTATCAA AGAAGCAAAA GTTGACTTAA GAAATAATCT ATATACGTTA
AAAAATCACA TAATCAATGA AAATAGATTA GAGTATTACT TTATGCAAAA TATCAAGTAT
ATAATAAATA AATTTGGTAT CGATAAAGCT ATACATATTA TTCAGAGGAA CTTTGACAGC
AAGAATAGAT TGTTTTTTGT AATAGATAAA AATCTCAATC CCATCGGACA TAGATATACA
CCAAATGAAA TATCCATATA TCAAAAAGCG CTTTCTAATA AAAGAATAAA AAACGCCGTT
TATAACTGTG TTTTATCTAA TAAATACTGT TTTACGACAG CTTTCAATGT GGGCGAAGAT
TACTTCATAT TTACCATCTT ACCCATAAAC AAGACTTCAT ATCTTCTTCA AATACACAAA
CCTCCTCTTT ACATATACGC TTCTTCTACA ACAGGTTTTT CTTACGGGGT TTTGCTTCCA
AACGGTGTCA TAAACGCTCA TATACCTATT TTGTCTAAAA GCCAAATACA CAAACCTCTT
TATGATTTTA TAACATCTTA TAAAAACCTA GGTTTCGCCC TTGTAAGATA CAAATCTCCT
ATAGATGGTG AGCCAAAACT TGCAGCTATC ACAAGACTTG ATCTTGTGGC TGGTAAAGTT
ATATATCCTT ATGTATCCGC TTCTCTTCCT TTTGTGTTAA AAGGTTATTA CACCAATTTA
AGAGCCGTCT TTTTGCCCTG GTTTATATTT GGCGTTATCA TACTTGGTTT TATAGCTTTT
ATAATCAAGA AGACCAAAAA TGAATATCTT TTGAATCAGG AAAGATACTT TTATGAGGTG
TTGTTTGATA AATATTCTCT TCCGTTACTC CTTATAGACG AAGATGGAAA GATTTTAAAG
GTAAATGAAC CAGCGTTAAA GCTGTACGGC TATTCTAAAG AAGAGATTAA AAATATGTAT
TTATATGAAC TTGAAGGAGT GCCAAAAGAG GAATCGGAAA GGTTGTTAAG AAATATAATA
CATGGTGATT TAAAAAGTTT TGAATTTATT CATGTTGCTA AAAGCGGCAA AAAGATAAAC
GTAGAAGTTT ATGTAAACAA GCTAAGTATG GAAAATAAAA CATACATCTT ATATACCGTA
TTTGATATTT CTGAGAAAGT ATTGTTGGCT AAACTTTTTG ATATGTTAAA AGAGGTAAAC
ACTATACTGA TAAGTGTGGA ACTAGAGAGC GAACTATTAA ACGGCATAGC AGAGACCATT
ATAATGTTTG ATTTTGACTG CGTTGAGATA TTTAAAGTAA AACAAAAAGA CAATCTTGAA
CTTATGTTAA AATCTGGAAC ACCTATTGAA GATATCAGCT TAGAAGAGGA AAAAAGAGCT
TTGCTTAGCA AATCTATCAC TTTACAATCT AAACCTACGT ATTCTAAGGC ATCTATACCA
ATACTTTCTC ACAATGAAAA TGAAGTTGTT TATATTATTA GCATATATAA AAAAGAATTT
CAATTCTTTG ATAATTATCA TATTGTTAGC ATACTTGAAG AGCTTGAGAA AGACATATCT
TTTGCTCTGA AAAAAATCTT GGAAGAGCAA AATAGCCTCA TATTAAGAAA AGCCTTAGAA
AACTCTAAAG GCTGGGTGCT TATAACGGAT GAAGAAGGTT ATATCCTATA TGCAAATCAA
ATGGTATGTG AAATATCTTT GTACTCTTGC GAAGAGGTAA TAGGTAGAAA ACCAAATATA
TTTAAATCTG GTTATCACGA TAACGATTTT TATAAAAGAT TATGGCGGAC AATAAAATCT
GGCGGTACTT TTGAAAGTAT TTTCTACAAT AAAAAGAAAA ACGGAGAAAT CTTTATTTTA
GAGGAGTCTA TTATTCCTGT CACATTAAAA GACGGTACTA TAAGATATAT TACTATAGCA
AAAGATATAA CCCAAGAAGT AGAGCTTGAA AAAAAGCTAG AGCGTTTTAG TTTTATGGAT
TCTGCTACAG GTCTTTTAAA TATAAACGGC TTTTCAAAAG CTATAAACGA TAGATTGGAG
TATTTAAAAA ATCAATCTAA AAAGGGAGCT TTGATACTAC TTGATATATA TGGATTTTCT
ATATTAAATC AAATATACGG TTTCAACAAA GCAGATGAAA TTGTAAAAAA AGTAGCAAAT
ATGCTAAAAG AGCTTTTAGA GCCAGAAGAT GTTATAATCG CAAAAATCGG TCCAGATGAG
TTTGGTATCT TTAAAGATAT AGAGAAAGAA GAAGATTTAT TTGCATTTGT TGATAAAATA
AACGACATCT TTGCAAGTGG TATAGAGATA GAACTAGATA ATTTTAGAAA ACTAGATAAG
CTGCATATAA ATATGGGGAT TTCCTTATAC GATGAAGATG GTGATAGTTT TGAAAAGCTT
TATGAAAGAG CTAGTTTAGC GCTACAAGAA GCTAAAAAGG ACGGAGAAGG TAAATATAGG
TTTTTCTCTA AAGATATAGA TATAGTGGTG AAAAGATATG TGGAAGCTCA AGAGCTTGTA
GAAAGAGCTC TGGACAAAGG GTTGTTTAAA TTTTTCTATC AGCCTTACTT TGACATTAAG
ACAAAAGACT TTGTAGGTTT TGAAGCCCTC ATAAGAATAA TAGATGAAGA TGGTAGTATA
ATATCTCCTT ACAAGTTTAT AGATTACCTC GAATCTTCTT CGTATTTTTT AAATAGATTT
CAAGAGGTAT TTTTAAAGAT GGTTGAAAGC GATATGAATA CGTTTATTTC AAAAGCTAAA
TCACATTTTA GCTCTGCTTT CAACATATCT GCAAACAGCT TCAAAGATGA TATTTTCATG
TCAAAGCTTA TAGGCCTTTG TCATAAGTTT GAGGATAAGC TTGTAATAGA GATTACAGAA
AGGATGTTGC TATCAGATTT TGAAAAGGCA AAAGAAATCT TGAGAAATAT AAGATCAGTT
GGTAGTAAAG TTGCTTTGGA TGACTTTGGC ACTTATTACT CTTCCCTTTC CTATGTTAAA
AATGTTGAGC TTGATATTAT AAAGATAGAT ATATCTTTTA TAAAGGATAT AGTTTTTGAT
AAAAGAAGTT TGGCGGTGGT AAAAGCCATA ATAAATCTTG CCAAAGCATT AGACATTAAA
ACAATAGCAG AGGGTGTAGA AAAAGAAGAG CAGTATAACC TTCTTAAAGA GGCAGGTTGC
GATATAGCTC AAGGGTATCT TTTTGCAAAA CCTATGCCTA TAGAAGAGGC TGTAAAATAT
ATAATCTAA
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| Protein sequence | MNNNKILNDI FKYKNIALWF FLAFAFIFFS LGLNLFYINK YKENTIKEAK VDLRNNLYTL
KNHIINENRL EYYFMQNIKY IINKFGIDKA IHIIQRNFDS KNRLFFVIDK NLNPIGHRYT
PNEISIYQKA LSNKRIKNAV YNCVLSNKYC FTTAFNVGED YFIFTILPIN KTSYLLQIHK
PPLYIYASST TGFSYGVLLP NGVINAHIPI LSKSQIHKPL YDFITSYKNL GFALVRYKSP
IDGEPKLAAI TRLDLVAGKV IYPYVSASLP FVLKGYYTNL RAVFLPWFIF GVIILGFIAF
IIKKTKNEYL LNQERYFYEV LFDKYSLPLL LIDEDGKILK VNEPALKLYG YSKEEIKNMY
LYELEGVPKE ESERLLRNII HGDLKSFEFI HVAKSGKKIN VEVYVNKLSM ENKTYILYTV
FDISEKVLLA KLFDMLKEVN TILISVELES ELLNGIAETI IMFDFDCVEI FKVKQKDNLE
LMLKSGTPIE DISLEEEKRA LLSKSITLQS KPTYSKASIP ILSHNENEVV YIISIYKKEF
QFFDNYHIVS ILEELEKDIS FALKKILEEQ NSLILRKALE NSKGWVLITD EEGYILYANQ
MVCEISLYSC EEVIGRKPNI FKSGYHDNDF YKRLWRTIKS GGTFESIFYN KKKNGEIFIL
EESIIPVTLK DGTIRYITIA KDITQEVELE KKLERFSFMD SATGLLNING FSKAINDRLE
YLKNQSKKGA LILLDIYGFS ILNQIYGFNK ADEIVKKVAN MLKELLEPED VIIAKIGPDE
FGIFKDIEKE EDLFAFVDKI NDIFASGIEI ELDNFRKLDK LHINMGISLY DEDGDSFEKL
YERASLALQE AKKDGEGKYR FFSKDIDIVV KRYVEAQELV ERALDKGLFK FFYQPYFDIK
TKDFVGFEAL IRIIDEDGSI ISPYKFIDYL ESSSYFLNRF QEVFLKMVES DMNTFISKAK
SHFSSAFNIS ANSFKDDIFM SKLIGLCHKF EDKLVIEITE RMLLSDFEKA KEILRNIRSV
GSKVALDDFG TYYSSLSYVK NVELDIIKID ISFIKDIVFD KRSLAVVKAI INLAKALDIK
TIAEGVEKEE QYNLLKEAGC DIAQGYLFAK PMPIEEAVKY II
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