| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1395 |
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| Symbol | |
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| ID | 6744220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | - |
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| Start bp | 1308308 |
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| End bp | 1309723 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 642751212 |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_002122058 |
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| Protein GI | 195953768 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.567539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAAA CTTTGTTTTT GGCGTTTTTT CCTTGCGCTT TAGCCTTTGG CGAAAACCTT
CCCCCTTGGT TTCCTCAATT TTTAGGTATG AGGGCAACAT TTGTGGGTCA ATACTCTACA
AACTTCAACT CCCCTTATGA AGGACCTATG ACCTTTGGCA ATCCATATAA AAACAACGGT
GGTGGAAGAT CAGAAGAACT AACCCAGTCT TACGGTTTAT ACACAGGGGC ACAGATTACA
AAAGATATCC AAGCTTATCT TGATATACAG CTTTTTAAAG GAAACGGCAT AGGTGGTGGT
CAAGGAATAG GTGGTTATCC AAACTCCCTT TACATAAGAG CAGGGTCATC TAACCTTGGC
AAAAACCCAT ATATAGCAAG AGCTTATATT ATATACACAA AAGCCCTATC TCAATCTTTG
GAATATGAAG GAAGAGCTCC AGATCAGCTT CCAGGGTACT ATCCAAAAGA ATATTTTTAT
GTAAAGATAG GAAAGTTTTC CATAGCAGAT GATTTTGATA ACAACCGATA TGCTAACTCT
CCAAGAACTC AGTTTTTAAA CTATGATTTT AACTACAACG TAGCTTGGGA TTACGGAGCA
GATACAAGAG GATACACAGT AGGTATAGAA TCTGGCGTTG TTAAAAAACA CTATTCTTTT
AAAATAGCTT TAGGGGCAGA ACCTACGAAG GCAAACGGCA ACACCTACGA TCAGTCTGGA
GCTTACAGTC TAAACACACA GCTTTCTCTA AGACCAAACG ACATAGGAAC TGTGATAAGG
CTTCTTGGCA TGTTAAACTA CGGTAGGATG GGAAGCTATA CTGAGGCTAT GGATAATTTT
AGCTATTATT ATTCTCCAAA TAGCCCTTGT TATTACACAG AATTTGGGCC AAATGGAGCT
TTGGCAGGGT ATGATTACCC TGTTATATGC ACAGAGTCAA AAGATCACAA AAGATACAAA
TGGGGATTTT TCCTAAACTT AGAACAACCT ATAGCAGATG ATGATAAAAC AGGACTCTTT
TTAAGAGCTG GTTTTAACAA CGGACAAACA GAAGATCTTG CCTATACCGA TGTAGATAGA
GACATAGCAG GTGGTATTTC TATAAACGGC GTTCATTGGA AAAGACCAAA AGACCAACTT
GGCATAGGGC TTGGAATAAA CGGTCTTTCA AACACCCACA AAAGATATTT GGAATCAGGC
ACCATCAACG AACCATCATC TTCATTCTTT GTAGGCTCAG GTCAAGACGG ACAATTTAAC
TACTCCTATG AAGAAATAAT GGAAGCTTAC TACAAGTATC AACTAAACAA ATATATATCC
ATATCTCCAG ATGCTCAATA CATAAGACAT CCAGGGTATG ATAAGAATAG AGGCCCTTTA
TGGGTTTATG GGCTTAGAGT AAATGCACAG TTTTAG
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| Protein sequence | MRKTLFLAFF PCALAFGENL PPWFPQFLGM RATFVGQYST NFNSPYEGPM TFGNPYKNNG
GGRSEELTQS YGLYTGAQIT KDIQAYLDIQ LFKGNGIGGG QGIGGYPNSL YIRAGSSNLG
KNPYIARAYI IYTKALSQSL EYEGRAPDQL PGYYPKEYFY VKIGKFSIAD DFDNNRYANS
PRTQFLNYDF NYNVAWDYGA DTRGYTVGIE SGVVKKHYSF KIALGAEPTK ANGNTYDQSG
AYSLNTQLSL RPNDIGTVIR LLGMLNYGRM GSYTEAMDNF SYYYSPNSPC YYTEFGPNGA
LAGYDYPVIC TESKDHKRYK WGFFLNLEQP IADDDKTGLF LRAGFNNGQT EDLAYTDVDR
DIAGGISING VHWKRPKDQL GIGLGINGLS NTHKRYLESG TINEPSSSFF VGSGQDGQFN
YSYEEIMEAY YKYQLNKYIS ISPDAQYIRH PGYDKNRGPL WVYGLRVNAQ F
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