Gene HY04AAS1_1184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHY04AAS1_1184 
Symbol 
ID6744001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHydrogenobaculum sp. Y04AAS1 
KingdomBacteria 
Replicon accessionNC_011126 
Strand
Start bp1095449 
End bp1096270 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content33% 
IMG OID642750993 
Productshikimate 5-dehydrogenase 
Protein accessionYP_002121847 
Protein GI195953557 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.504249 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAGCT TACCAAACGG TAAAACCCTT TGCTATGGTA TCTTTGGGTA TCCAGTTAAA 
CATAGTTTAT CCCCTGTTTT TCAGTCTTTT GCTTTTAGTA AAAAGAATAT AAACGCTATA
TATATGCCTT TTGAAGTTAA ACCAGAAGAC TTGGAAATTG CTATAAAAGG CGCAAAAGCA
ATGTCTATAA AAGGCCTAAA TATTACAATA CCCCATAAAG AAAACGTGTT GGAATTTGTA
GATGTGATCT CTGATGATGT AAAGAAAATA GGTTCTTGCA ATACACTTTT TTTTGAAGAA
AACATTATAA AAGCCTACAA CACAGATTAT ATAGGTTTTA AAAGGGCTTT GGAAGAAAAA
ACTTCTTTAA ATGGCAAAAA AGCTCTTGTG CTTGGAGCTG GTGGGACTTC AAAAGCTATA
ATATACGCTC TTACAAGCTC TGGTGTAAAA GTTTACCTTC ACAATAGAAC CATAGAAAAA
GCCCTAAAAC TAAAAGAGAT TTTTGATTTA GAAGTGGTAG GACACATAGA AGATATACTT
CAATACGTAG ATATCATAGT AAATACCACA TCTGTGGGAT TAAAAGATGA TGATAAAGCT
CTTTTTGATT ACGATAAGAT ATCAGCTCAT CATATAGTTT TTGATGTGAT ATACAAAGAT
ACAGCTCTTA TAAAAAAAGC AAAAGAGAAA GGAGCCGTTG CTGTAAACGG CCTTCCCATG
CTCGTTTATC AGGGCTTAGA GAGCTTTAGA ATATGGACAG GTGTTGATGC TTTTGATATA
GCGCCTCAGA TTTTTGAGCT TTTAAAATCA TATAAAACTT AA
 
Protein sequence
MMSLPNGKTL CYGIFGYPVK HSLSPVFQSF AFSKKNINAI YMPFEVKPED LEIAIKGAKA 
MSIKGLNITI PHKENVLEFV DVISDDVKKI GSCNTLFFEE NIIKAYNTDY IGFKRALEEK
TSLNGKKALV LGAGGTSKAI IYALTSSGVK VYLHNRTIEK ALKLKEIFDL EVVGHIEDIL
QYVDIIVNTT SVGLKDDDKA LFDYDKISAH HIVFDVIYKD TALIKKAKEK GAVAVNGLPM
LVYQGLESFR IWTGVDAFDI APQIFELLKS YKT