Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HY04AAS1_1184 |
Symbol | |
ID | 6744001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Hydrogenobaculum sp. Y04AAS1 |
Kingdom | Bacteria |
Replicon accession | NC_011126 |
Strand | - |
Start bp | 1095449 |
End bp | 1096270 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 642750993 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002121847 |
Protein GI | 195953557 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.504249 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAGCT TACCAAACGG TAAAACCCTT TGCTATGGTA TCTTTGGGTA TCCAGTTAAA CATAGTTTAT CCCCTGTTTT TCAGTCTTTT GCTTTTAGTA AAAAGAATAT AAACGCTATA TATATGCCTT TTGAAGTTAA ACCAGAAGAC TTGGAAATTG CTATAAAAGG CGCAAAAGCA ATGTCTATAA AAGGCCTAAA TATTACAATA CCCCATAAAG AAAACGTGTT GGAATTTGTA GATGTGATCT CTGATGATGT AAAGAAAATA GGTTCTTGCA ATACACTTTT TTTTGAAGAA AACATTATAA AAGCCTACAA CACAGATTAT ATAGGTTTTA AAAGGGCTTT GGAAGAAAAA ACTTCTTTAA ATGGCAAAAA AGCTCTTGTG CTTGGAGCTG GTGGGACTTC AAAAGCTATA ATATACGCTC TTACAAGCTC TGGTGTAAAA GTTTACCTTC ACAATAGAAC CATAGAAAAA GCCCTAAAAC TAAAAGAGAT TTTTGATTTA GAAGTGGTAG GACACATAGA AGATATACTT CAATACGTAG ATATCATAGT AAATACCACA TCTGTGGGAT TAAAAGATGA TGATAAAGCT CTTTTTGATT ACGATAAGAT ATCAGCTCAT CATATAGTTT TTGATGTGAT ATACAAAGAT ACAGCTCTTA TAAAAAAAGC AAAAGAGAAA GGAGCCGTTG CTGTAAACGG CCTTCCCATG CTCGTTTATC AGGGCTTAGA GAGCTTTAGA ATATGGACAG GTGTTGATGC TTTTGATATA GCGCCTCAGA TTTTTGAGCT TTTAAAATCA TATAAAACTT AA
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Protein sequence | MMSLPNGKTL CYGIFGYPVK HSLSPVFQSF AFSKKNINAI YMPFEVKPED LEIAIKGAKA MSIKGLNITI PHKENVLEFV DVISDDVKKI GSCNTLFFEE NIIKAYNTDY IGFKRALEEK TSLNGKKALV LGAGGTSKAI IYALTSSGVK VYLHNRTIEK ALKLKEIFDL EVVGHIEDIL QYVDIIVNTT SVGLKDDDKA LFDYDKISAH HIVFDVIYKD TALIKKAKEK GAVAVNGLPM LVYQGLESFR IWTGVDAFDI APQIFELLKS YKT
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