| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_1171 |
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| Symbol | |
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| ID | 6743988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | + |
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| Start bp | 1083092 |
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| End bp | 1085842 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642750981 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002121835 |
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| Protein GI | 195953545 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2524] Predicted transcriptional regulator, contains C-terminal CBS domains
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTATA CCGTTTATTT GGCTTTAAAA AATGAGGAAG TTGTAAATTT TCTAAAGGTT
GAAGCCAGTA CGCCTACAAA ATATGCTATA CAGCTGATGG CTAATTTTGA TAAGGACTAC
GTAGTTGTTG TTGAGAACAA TAAAACGGTG GGTATTTTGT CCGAGTCTGA TGTTTTAAAG
TTAAAATACG CCAACGAAAA TCTTGATAAA AACGTATTAG AGTATGCCTC AAAACCAGCA
ATAACCGTTA GAAGCTCTTT CAACCTCTTT GAGGCCATTA ATTTAATGAT AGAAAACGAT
ATATCAAAGC TTATTGTAGT TGATGATGAA GATACACCAA TAGGTGTGCT TACTCAAAGA
ACTCTTATAA AAACAATAGA CCAGGAGATG TTAAAAAGAC ACAAACATGT TAAAGATATA
TTAAGACAAA GAGATTTGAT AAGTTTATCC CCCACGGATA CTCTTAGTCT AGCTCTTAAA
ACCCTCGTAG AAAACAAAAT AAGAGCAGTA GTAATATTAG AACCCAACAA GACAAATAGT
AGTGAATTTG ACGAAAACGA GCAAGATACA AACGATGGCA AACTTGTTGA TCGTGGTAGA
CTTGTAAGCC GTGGTAGACT TGTGGATCGT GGTAGACTTG TAAGCCGTGG TAGACTTGTG
GATCGTGGTA GACTTGTAGG TATAATAACT CAAAAAGATT TGACTAAGCT CATATCTGTC
GGTGTTGATT TAGATAAAGC TTTGATTAAA GATTATATGA AATCCCCTGT AATAACTTGC
AGAATGGACA CGCCTCTTAT AGAAGCTTCA AAGATGATGG CAAGCTTTAA TATAAGAAGA
CTCGTAGTGG TAGATGAAAA AGACAATCCC ATAGGCATAG TAACCCAAGG AGATATAATA
AGAAATCTTG AGGAAAAATA TGAAGAATAT ATAGAGAAAA AGTTAAAACA CTTAAGATCT
ATGCTAAATA TAATGCAAGA TCCAGTGTTA GAGATTGTGG ATGCTGGTGT TTTTGATTCT
TCCTCTGGCG TGATAATATG GCAAAATGAT AGTGCAAAGA GCATATTTGG AAACTTTTTA
GGGAAAAATA TAGAAGAAAT TATAGATCAT TATACATGGA AATATATATA CGAAAAGCTT
AAAAATGAAA AAAATGTAAA CTATGAGCCT ATATTTATAA AAGATTATAT ATATCATATA
TCCTGTGTGT ATATTGAGGA TGAACAAAAA ATAATAGACG GTAGAATCAA AATTTTGTTT
AAAGACATAA CAAAAGCCTA TAAATCTGAG TTAGAGCTAA AAAAGATAAA TAAGCAATAT
AAAAATATTT TAGACGCAAT GAACGATATG GTTATAATCT ACGATGCCTA TGATTATAAA
ATCAAATTTG TTAATAAATC TACTTTAGAA CACTTGGGAT ATACAGAAGA AGAGCTTACA
AACAAAAATT TCTTCGATAT CATACTAAAT CCAGAAAATG TAATAAAACA TTTCATAGAA
CGCATTGTAA AAGAAAACAG AAAAGTGGTA GGAAGACGAG TGTATATCAA AAAGAATGGA
GACTTTTTAC CAGTGCATGT AGTAGCAACA AAAGTAGAAT TTGAAAATCA CACTAGCAAA
GAACATATAC TTGTGGTAGC AAGAGATATA TCAAAAGAGT TAATCATAGA AGAAAAACTA
AAAAATACAA ACAAAGATCT AAATATACTT TATTCTTTTA TTACAGATCT TTCTAAAGCG
CATCAAGAAG ATGAAGCTTA TGATATTCTT ATTCATTACT TAAAGAGGCT AGGAATAGAA
TACGTGCATA TGTACAAACT AAATCCATCC CTAAACAAAA TCGTGTCCTC TTATTTGCTA
AAGACAAAAA GCATATATCA ACCACATGAT GAGAGCAACG TGTGGGTAAA TGATTGTTTA
GAAGACAATC CGTCTTTGTG TAAAGTTATA AAATCTGGAA CTACTTTAGC TATTCCCAAT
ATCACTATAG ATTATGGCTG TCCTAGGATT GCTTTAGGAT CTTCTATAAA ATCTTATATG
TGCGTACCTA TTTTTATAGG CGGTATTTAC ATAACAAACG CCACAGCTAT CTTAACCCTA
ATGTCTTCTA AAGAAAATTT TTTCACCGAA GATACAAAGA ATAAAGTAAA TAAATTTATA
GAGGCTTTTA TACCTGTAGT TAGCAATTTA AGACTCATAG AAATAAATAA AGAGCTTTCT
ATAAGAGATC CTCTCACAAA TGCTTACAAT AGGCGGTTTT TGGATGAGAT ATTGCAAAAG
GAATTTCAAA AAGCTCTAAG ATATCAAACC AAATTATCGA TTGTTATGCT AGACGTAGAT
AACTTTAAAA AATTTAACGA TACATACGGC CATAGGGCAG GGGATATGGC TTTACAACAT
CTATCTAAAG TAGTTCAAGA AAGCATAAGA GTTACAGATA TATTTGCTAG ATATGGTGGT
GAGGAGTTTA CGATAGTGCT TCCAGAAACA TCTAAAGAAT ATGCAACCGA AATAGCAAAT
AGAATAAAGG ACGCTCTATC AAGCAAAATG TTTTATGCAA ACTCTTTGGA ATCTAAAGAC
ATAAGCACAT TAAATATAGA TGATATTTAT ACAAAGTATT ATATAACCGC GTCTTTTGGT
GTAGCTACTT TTGATGATGA TGCCAAAAAT TTAGAAGAAT TGATAAAAGT AGCTGATATG
AGGCTATATA AAGCAAAAGA ATTAGGTAAA AATAGAGTGG TATATAATTA A
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| Protein sequence | MSYTVYLALK NEEVVNFLKV EASTPTKYAI QLMANFDKDY VVVVENNKTV GILSESDVLK
LKYANENLDK NVLEYASKPA ITVRSSFNLF EAINLMIEND ISKLIVVDDE DTPIGVLTQR
TLIKTIDQEM LKRHKHVKDI LRQRDLISLS PTDTLSLALK TLVENKIRAV VILEPNKTNS
SEFDENEQDT NDGKLVDRGR LVSRGRLVDR GRLVSRGRLV DRGRLVGIIT QKDLTKLISV
GVDLDKALIK DYMKSPVITC RMDTPLIEAS KMMASFNIRR LVVVDEKDNP IGIVTQGDII
RNLEEKYEEY IEKKLKHLRS MLNIMQDPVL EIVDAGVFDS SSGVIIWQND SAKSIFGNFL
GKNIEEIIDH YTWKYIYEKL KNEKNVNYEP IFIKDYIYHI SCVYIEDEQK IIDGRIKILF
KDITKAYKSE LELKKINKQY KNILDAMNDM VIIYDAYDYK IKFVNKSTLE HLGYTEEELT
NKNFFDIILN PENVIKHFIE RIVKENRKVV GRRVYIKKNG DFLPVHVVAT KVEFENHTSK
EHILVVARDI SKELIIEEKL KNTNKDLNIL YSFITDLSKA HQEDEAYDIL IHYLKRLGIE
YVHMYKLNPS LNKIVSSYLL KTKSIYQPHD ESNVWVNDCL EDNPSLCKVI KSGTTLAIPN
ITIDYGCPRI ALGSSIKSYM CVPIFIGGIY ITNATAILTL MSSKENFFTE DTKNKVNKFI
EAFIPVVSNL RLIEINKELS IRDPLTNAYN RRFLDEILQK EFQKALRYQT KLSIVMLDVD
NFKKFNDTYG HRAGDMALQH LSKVVQESIR VTDIFARYGG EEFTIVLPET SKEYATEIAN
RIKDALSSKM FYANSLESKD ISTLNIDDIY TKYYITASFG VATFDDDAKN LEELIKVADM
RLYKAKELGK NRVVYN
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