Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HY04AAS1_1061 |
Symbol | |
ID | 6743876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Hydrogenobaculum sp. Y04AAS1 |
Kingdom | Bacteria |
Replicon accession | NC_011126 |
Strand | + |
Start bp | 988968 |
End bp | 990851 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 642750869 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_002121725 |
Protein GI | 195953435 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00520521 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTATAT TAGAACATAT AAACAGCGTA TTGGATTTAA AAGAGCTTTC AAAAGAAGAA CTAAAGCTTT TAGCCGAAGA AATCAGAGAG TTTATCATAG ATGTAACATC CAAAAACGGA GGTCATGTGG CTCCTGGTCT TGGTACTGTA GAACTTACCA TAGCACTTTT GAGGGTTTTT GATGTTCCAA AAGATGTTGT GGTTTGGGAT ATAGGGCATC AAGCTTACCC TTGGAAAATA CTAACAGATA GGAAAGAGGT ATTTCATACA CTTAGAAAAA AAGGTGGTAT ATCTGGGTTC TTAAGAATAG AAGAGAGCTT ATACGATGCT TTTGGGGCTG GGCATAGCTC TACTTCCATA TCGGCAGCGG AAGGTTTTAG AGTGGCAAAA GACCTATTAA AAGACGATTC TTATGTAGTA GCCGTTATAG GGGACGGTGC CATGACCGCA GGCATGGTAT ATGAAGCTTT AAACAACATA GGACATCTTC ATCATAACAA ACTTATAATA ATATTAAACG ACAACGAAAT GTCTATATCA AAAAACATAG GTGCAATATC CACATATTTA AACAAACTAA TCACCGGCAG GCACATACAA GATACAAGAA ACAAAATAAA AAATATTTTA GATAAAGCTG GGTTTGTACC AAGAAGATTT GCAAAACTTA CAGAAGAGTT TGTAAAGGGT TTTGCCACCC CTGGTATTTT GTTTGAAGAG CTTGGTCTAA ATTACATAGG TATAATAGAT GGTCACAACG AGGAAGCCCT TGAAACAACG TTAAAAAACG CAAAATCTAT AGATGGACCC GTGTTAATAC ACATTGTCAC AAAGAAAGGA AAGGGCTACG AACCAGCGGA AGAAAACCCC GTCAAATGGC ACGGTGTTGC CCCTTACAAA AAGGAATCCG GTGAAGCTTC AAAAATGTCT GGTGGTAAAT CCTGGACCCA ATGCTTTTCC GAAGCGCTTC TTAAAATAGC AGAGCTTGAT GAAAGAGTGG TAGCCATAAC CCCAGCCATG AAAGAGGGTT CTGGTCTCGT GGATTTTGCT AAAAAATATC CAGATAGGTT TTTTGACGTT GGCATAGCCG AACAGCACGC CGCTACTTTT TCTGCTGGGC TTGCTGCAGG TGGCTTAAAG CCGGTTTTGG CTTATTATTC TACTTTTATG CAAAGAGCCT ACGACCAAAT AATACACGAT ATAGCTCTTC AAAATCTAAA CGTTGTTTTT GCAGTGGATA GAGCTGGTTT AGTAGGAGAA GATGGGCCTA CACACCACGG AGTTTTTGAT ATATCGTTTT TAAATTGTAT ACCAAACATC GTTATATCAT CTCCCAAAGA CAATCTTGAG CTTTTAGACC TTCTTTACAC CGCCATAAAT TCCAACAAAC CGTTTGCAAT AAGATATCCA AGAGGAGAAG CGGTTTTATC CAAAGAAGAA AGAGCACCAA AGCTTATAAA AATAGGTAAA TGGGAAGTGT TAAAGCCCGG TACAGATATA GCTATACTTA CAAACAGTTA TCTTTTAAAA GAAGCTTTAG AAGCATCTTA TGAGCTTTTA GAGCATGGTA TAAACATAGA AGTGGTAAAT GCAAGGTTTA TAAAACCTTT AGACGAAGAT ATGCTATTTG ATATAGCAAA AAGGTTTAAC GCTGTTCTTA GTATCGAGGA CGGGGTATTA AAAGGAGGTT TTGGAGCCTC TATTTTAGAG TTTTTTAATG ACAATATGTT AGACGTAAAA ATGTATAGGA TAGGTATTCC AGACAAGTTT GTAGAACATG CTTCTCAGAA AGAGCTAAGA GAGATGTTTA ACCTTACAAA AGACGGTATT AAAAAGTTTA TATTAGAGCA TATAGTTGCA TCTCAAAAGT TAGAAAACTT TTAA
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Protein sequence | MSILEHINSV LDLKELSKEE LKLLAEEIRE FIIDVTSKNG GHVAPGLGTV ELTIALLRVF DVPKDVVVWD IGHQAYPWKI LTDRKEVFHT LRKKGGISGF LRIEESLYDA FGAGHSSTSI SAAEGFRVAK DLLKDDSYVV AVIGDGAMTA GMVYEALNNI GHLHHNKLII ILNDNEMSIS KNIGAISTYL NKLITGRHIQ DTRNKIKNIL DKAGFVPRRF AKLTEEFVKG FATPGILFEE LGLNYIGIID GHNEEALETT LKNAKSIDGP VLIHIVTKKG KGYEPAEENP VKWHGVAPYK KESGEASKMS GGKSWTQCFS EALLKIAELD ERVVAITPAM KEGSGLVDFA KKYPDRFFDV GIAEQHAATF SAGLAAGGLK PVLAYYSTFM QRAYDQIIHD IALQNLNVVF AVDRAGLVGE DGPTHHGVFD ISFLNCIPNI VISSPKDNLE LLDLLYTAIN SNKPFAIRYP RGEAVLSKEE RAPKLIKIGK WEVLKPGTDI AILTNSYLLK EALEASYELL EHGINIEVVN ARFIKPLDED MLFDIAKRFN AVLSIEDGVL KGGFGASILE FFNDNMLDVK MYRIGIPDKF VEHASQKELR EMFNLTKDGI KKFILEHIVA SQKLENF
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