| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0519 |
|---|
| Symbol | |
|---|
| ID | 6743315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | + |
|---|
| Start bp | 457413 |
|---|
| End bp | 458687 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 642750310 |
|---|
| Product | 3-isopropylmalate dehydratase large subunit |
|---|
| Protein accession | YP_002121184 |
|---|
| Protein GI | 195952894 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR01343] homoaconitate hydratase family protein
[TIGR02083] 3-isopropylmalate dehydratase, large subunit
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000000192959 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACATA CTATTACTGA AAAAATAATT GCAGATCATG CTGGGAAAAA GGAAGTGTTT
CCTGGAGAGC TTGTTACTGC CAAAATAGAT TTGGCAATGG CCAACGATGT CACTGCTCCT
TTATCCATAA AAACTTTAGA AAAATACGGC ATAGAAAAAG TATTTGACAA GGATAAAATT
GCGCTTGTCC TATCTCATTT TGTTCCAGCG AAAGATATAA AATCTGCAGA ACAAGCTAAA
ATAGTAAGAG ATTTTGCTAA AAAACACAAT ATAAAATGGT TTTTTGGGGA AGGCGAAGGT
ATAGAGCATA CATTGTTGCC AGAAAACGGA ATAGTTGTAC CAGGTGATTT GGTAGTAGGA
GCTGACTCTC ATACTTGTAC TTACGGAGGT ATTGGAGCTT TTTCTACAGG TGTAGGAAGC
ACAGACTTAG CCTACGCTAT GGCCACTGGC GAGATATGGT TAAAAGTGCC AGAATCGATG
AAATTTATAT TTTACGGAAA ACTTAATAAG TGGGTTAGTG GTAAAGATTT GATACTTTAT
ACGATAGGTC AAATAGGTGT TGATGGTGCG CTTTATAGAG CTATGGAGTT TGATGGAGAA
GCCATAAGAA GCTTGGACGT ATCACAAAGA CTAACCATAG CAAATATGGC GATAGAGGCT
GGCGGAAAGA GTGGTATCAT ATCTCCGGAC GAAAAAACTA TAGAATATGT AGAAAAAAGA
GCAAAAAAAC CTTACAAGAT ATATCAAAGC GATAAAGATG CACATTATGT AGAAGTATAC
GAGTGGGATG CTTCTTCTAT AGAACCTATG GTGGCATGGC CTTATTTACC CTCAAATGTA
CATCCAGTCT CTGAATCTAC CCACATAACT ATAGATCAAG CTTTTATAGG TTCTTGTACA
AATGGTCGTA TTGAAGATTT AAGAATAGCA GCAAGCATAT TAAAGGGTAA GAAGGTTCAT
CCTTACACGA GATGCGTTGT CATACCAGCT TCAAAAAATG TATACTTGCA AGCCCTCCAT
GAAGGTTTGG TAGATATATT TATAGAAGCG GGGTGTGCCG TCAGCACATC AACATGCGGT
CCTTGTTTGG GCGGGCATAT GGGAATACTC GCCAAAGGAG AAAGATGCAT ATCTACTTCC
AATAGGAACT TTCCTGGTCG CATGGGCCAT CCACAAAGCG AAGCTTATTT GGCAAACCCG
GCTGTAGTTG CTGCGAGTGC TGTTTTAGGT AGAATCGCTC ATCCTGAAGA AGTAGCTTCT
GAAGTATTAG TATAA
|
|---|
| Protein sequence | MGHTITEKII ADHAGKKEVF PGELVTAKID LAMANDVTAP LSIKTLEKYG IEKVFDKDKI
ALVLSHFVPA KDIKSAEQAK IVRDFAKKHN IKWFFGEGEG IEHTLLPENG IVVPGDLVVG
ADSHTCTYGG IGAFSTGVGS TDLAYAMATG EIWLKVPESM KFIFYGKLNK WVSGKDLILY
TIGQIGVDGA LYRAMEFDGE AIRSLDVSQR LTIANMAIEA GGKSGIISPD EKTIEYVEKR
AKKPYKIYQS DKDAHYVEVY EWDASSIEPM VAWPYLPSNV HPVSESTHIT IDQAFIGSCT
NGRIEDLRIA ASILKGKKVH PYTRCVVIPA SKNVYLQALH EGLVDIFIEA GCAVSTSTCG
PCLGGHMGIL AKGERCISTS NRNFPGRMGH PQSEAYLANP AVVAASAVLG RIAHPEEVAS
EVLV
|
|---|
| |