| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0259 |
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| Symbol | |
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| ID | 6743053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | + |
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| Start bp | 231585 |
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| End bp | 236276 |
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| Gene Length | 4692 bp |
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| Protein Length | 1563 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 642750052 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_002120927 |
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| Protein GI | 195952637 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000323762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAGAG GTTTGTTACC TTTTAATAAG ATAAAGCTTT TGCTTGCCTC ACCAGAGCAA
ATACTTAGTT GGAGTCATGG AGAGGTTAAG CGTCCTGAGA CTTTAAATTA CCGCACTCTG
AAACCCGAAA AGGAAGGTCT TTTCTGTGCA AAAATATTTG GACCTTTGAA AGATTACGAA
TGTTTGTGTG GAAAATATAA AGGTAAGAGA TTTGAAGGTA CTATTTGTGA TAGATGCGGT
GTTGAAGTAA CGAAAGCTTA CGTTAGAAGA GAACGATTTG GCCATATAAC CCTTGCTACT
CCTTGTGCTC ATATATGGTT TTTAAAATCT TCTCCGTCTA AGATAGGTGC ATTGCTTGGT
TTGTCCGCTA GAGATATAGA AAAGGTTATA TATTTTGAGT CTTACTTAGT GGTAGAATAT
CCAACTCCTG ACATGGAGGC TACTTTCTCA AATTCAGAAA ATACTATCCC TGTTATAAAA
GATGGTGTTA CTCATCATGT AAAACTGCAC GTTGTTACGG AAGAACAATA TGAGAAGGAG
TTTGCTTACA GTATAGACAA CAGGTACGAA AGTGGGATGG GAGCCGAATT TGTAAGATAT
GTTTTATCTA TTTTAGACTT AGAAACGTTT GCTTTTAAAC TAAAGAAAAT TTTGAAGCCT
TACACCTTTG GATTTGAAGA TTTGGGTCCA AAGATGGAGC TAGAGCATAA AAAGCTTTAC
GAAAAGATAA TAATGTTTTT AGCAGACAGG GTAAAGCTTT ACAGCGTAGG TATCGCTACA
TCGCTTAACG GTGTTCAGAT GTCTATTGAA GACGTGATTC ATGGTATTGT AAGTGAGTCA
ATATATTTAA ACATCAAAAC TGGTGAAATA TCCAATCAGG ATTTAGGGGA CGATTGGTAT
ACTTCAAAAG ATGCTATAAG GTACAGATTT GAATATGTAA GAGGACAAAA TCAAAATATC
CCTGTTTTTG ATAAGATACA AGAAGATGTT AGAAATATAG TTTTAAAGGA CTTCTCGGAT
ACAAGGGTTA AAAATTTAGT AAAAACCTTA AAACTTGTAG AAGGCTTTTT GAAATCTTCC
AATAGACCAG AATGGATGAT ATTAACAGTT TTACCGGTAA TACCTCCAGA GTTAAGACCA
CTGGTAGCTT TAGATGGGGG CAAGTTTGCT ACATCTGATT TAAACGATCT TTACAGAAGG
CTTATAAATA GAAACAATCG CTTGAAAAGG CTTATAGACT TGGATGCCCC AGATATCATA
GTGAGAAATG AAAAGAGGAT GCTCCAAGAA TCAGTGGATG TTCTTATAGA CAACGGCAAG
AGAGGCAAGG TAGTAAGCCA ACACAATAGA CCGCTTAAAA GCTTATCAGA TTATCTCAAA
GGAAAGCAAG GCAGGTTTAG ACAAAACCTT TTGGGTAAGA GGGTCGATTA CTCTGGTCGT
TCTGTCATAG TGGTAGGCCC TTCTTTAAAG ATGCACCAGT GCGGTTTGCC AAAGATAATG
GCTTTAGAGT TGTTCAAACC TTTTGTTTAT AGAAGACTTG AGGAAAAAGG TTATGCCACT
TCTATAAAAA ATGCTAGGAA GATGGTAGAT CAAAAACAGC CAGAAGTATG GGAATGTTTA
GAGGAAGTTG TCAAGCAACA TCCAGTATTG CTAAACAGAG CTCCTACACT TCACAGGATG
TCTATTCAAG CCTTTGAGCC TGTTTTGGTG GAAGGCAAGG CAATTCAACT TCATCCGTTG
GTATGCCCTC CATTTAACGC AGACTTTGAT GGTGACCAAA TGGCTGTGCA TGTGCCTCTT
GGTATAGAGG CTCAGCTAGA ATCTTATATA CTTATACTTT CAACCCAAAA CATACTCTCA
CCTGCCAACG GAAGGCCAAT TATGTTGCCC TCTCAAGATA TGGTGTTGGG ACTTTTCTAC
GCTTCAAATT ATGTAAAAGG TGCTAAAGGC GAGGGTAAGG TATTCTTCTC TAAAGAAGAT
GCGTTTTTGG CTTTTGAAAA CAAAAAGATA GATATTCACG CTGTTATAAA GGTGAAGATA
GGGGATACTT TTGTAGAGAC AAACATAGGT AGACTTCTTA TAAATGAGGC ATTGCCAAAG
GGTTATAGAT TTGTGAATGA AGTTCTTGAT AAGAAAAGCA TATCAAAGCT TATAGCCGAT
ATTCACAAAA TTTATGGTTC AGAAATCACT GCTCAAACTC TTGATAGACT CAAGGAATTT
GGTTTTGAAA TGGCTACAAG GGCTGGAATA TCTATAGGTA TTGAAGATAT GAAGATACCA
AAAGCCAAGA AACGTCTTGT AGATAAAGCT TTTCACCAAA TGGACGAAGT GCTTGATCAA
TATAGAAAGG GTATAATAAC AAACAAAGAA AGGTACAACA AAACTATAGA TATTTGGTCA
CAAACCACAG AAGATGTTAC AAAGGCTATG TTCTCTGAAA TAGAAAAATC TGAACAAATA
GAAAACGGTA AAAAACTGCC AGGTCTTTTC AACCCTATTT ACATGATGGC AAACTCAGGT
GCTCGTGGTA ACAAAGACCA GTTAAGACAG TTAGCAGGTA TGAGAGGTCT TATGGCAAAG
CACTCCGGTG AGTTTATAGA AACGCCAATT ACTTCAAACT TTAGAGAGGG ATTATCTGTA
TTAGAATACT TCATATCTAC TTACGGTGCT AGAAAAGGTC TTGCTGATAC CGCTCTAAAG
ACATCTTTTG CTGGTTATCT AACTAGAAGG CTTGTAGATG TGGCTCAAGA TATGGTTATT
AGCGAATATG ATTGTGGTAC TAAAAAATAT GAAGTTATAG AAGCAATAGT AGAAAGTGGT
GAAGAAAAAA TATCTTTGAA AGAAAGGTTG ATAGGAAGAG TTTTAGCTGA GGACATATAC
GATCCAAACA GTAAAGAGCT TATAGCAAAA GCCAACGATG TTTTAGATGA AGAGCTTACA
GCTAGAATAC AGCAAGCTGG TGTAGTGCAG GTCAAGGCCA GATCAGTACT AAACTGCGAA
TCTGAAAACG GTATATGCTC TATGTGTTAT GGATGGGATT TATCTCAAAG AAAACTTGTT
TCTCCTGGAG AGGCTGTAGG TATTATAGCT GCTCAATCTA TAGGTGAGCC CGGTACTCAG
CTTACAATGA GAACATTCCA CATAGGCGGT GCTGCTACAG CTCAAAAGGT CCAGAGTGAA
CTCATTATAG AAAGTAGTGG TATTATAAAA TTCCAAGGTT TAAGGCTTTT AAAGAATAGA
AATGGAGGAC TTATAAACAT ATCTCAAGAA GGTGTAATAT TTGTATTGGA TCCAAACGGA
AGGACCATAG AAAGGCATAC AGTCCCTTAT GCTGCAGAGA TTTTGTTTAA AGATGGTTCA
GAGGTAAAGC AAGGTGACAT AGTGGCAAAA TGGGATCCGT TTAACACTTA CATAATAGCT
GAATCAAGTG GAGAGCTTGT TTTAAAGGAT ATTATAGTGG ATGTTACTGT AAGAGAAGAA
AAAGATACTC TTACCGGTAA AACAGCCATA GTTGTATCTT TCCTAAGAGC TAAAGACGCT
CAACTGCACT CACCGAGAAT AGTTATAAAG TCTGAAGATG GTAATGAGTA TTCTTATGAT
TTACCGGTAA ACTCTATATT AAATATACCG TTTGAAAAGC TTAAAACTAT ATGGGATAAG
TGTTTAGCTT GTTCTGAGGC TGAAAAGAAT GATGTTCAGC ACAATTACTA TTATTTAGAT
AAATTTGTTG TACATCCAGG GGATATTATA GCGCGTATTC CCAAAGAAAC TACAAAAGTT
AGAGACATAG TAGGAGGTCT TCCAAGGGTT GAAGAGTTGT TTGAAGCTAG GAAGCCTAAA
AACCCCGCTA TTATATCTGA GATAGATGGT ATAGTTAAGA TATATGAAGA TGCAGATGAG
GTTATGGTAA TATCGCCAAA AGGCACTAAG AAGTACGATA TAAAAAATGA GTTTATTCTG
ATTAAGCATG GTCAAGAAGT GAAAGAGGGT ACCAAAATTA CAGATACTAT AGTTAGTGAT
GTTAGTGGTA AAGCTATAGT AAGAGCAAAG GGTAGTAAGA TAGTGGTTTA CAATAAACAA
ACAGGCCAAG AAAAAGTTTA TTCTGTGCCC AAAGGTAAAT TTTTACAAGT AAAGGACGGT
GATTATGTAA AAGTTGGTGA CCAATTAACA GATGGAACTC CGCTTCTTGA AGAGATACTT
AAGATAAAGG GTATAGATGA GCTTCAAAAG TTCTTGTTAA AAGAAGTTCA GATGGTGTAT
AAGCTTCAAG GTGTTGATAT AAACGATAAA CATATAGAGA TAATAATTCG TCAAATGCTA
AGGAAAAGAG TAATAGTAGA TCCAGGAGAT AGTAGGTTTG TGGCTAACGA AGAAGTTGAT
GTAATAGAGT TTAACAAAGA AGTGGAAAGA ATTAGGAAAG AAGATGGTAA AATACCAAAA
GCAGAGCCTA TATTGGTGGG TATTACCAAG GCTGCCTTGT CTACTAAAAG CTGGATATCT
GCTGCTTCTT TCCAAGAGAC TACTAGAGTT TTGACAGAAG CTGCTAGCGA AGGAAAAGTT
GATGACTTGT CAGGTATAAA GGAAAATGTT ATAATTGGTA ATCTTATACC TGCCGGTACT
GGTCTTGAAG AGTACAAAAA TGTAAAGATA GAGATTGCAG AGCATGTCAC CCAGTTTAAG
AAGCAAACTT AA
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| Protein sequence | MKRGLLPFNK IKLLLASPEQ ILSWSHGEVK RPETLNYRTL KPEKEGLFCA KIFGPLKDYE
CLCGKYKGKR FEGTICDRCG VEVTKAYVRR ERFGHITLAT PCAHIWFLKS SPSKIGALLG
LSARDIEKVI YFESYLVVEY PTPDMEATFS NSENTIPVIK DGVTHHVKLH VVTEEQYEKE
FAYSIDNRYE SGMGAEFVRY VLSILDLETF AFKLKKILKP YTFGFEDLGP KMELEHKKLY
EKIIMFLADR VKLYSVGIAT SLNGVQMSIE DVIHGIVSES IYLNIKTGEI SNQDLGDDWY
TSKDAIRYRF EYVRGQNQNI PVFDKIQEDV RNIVLKDFSD TRVKNLVKTL KLVEGFLKSS
NRPEWMILTV LPVIPPELRP LVALDGGKFA TSDLNDLYRR LINRNNRLKR LIDLDAPDII
VRNEKRMLQE SVDVLIDNGK RGKVVSQHNR PLKSLSDYLK GKQGRFRQNL LGKRVDYSGR
SVIVVGPSLK MHQCGLPKIM ALELFKPFVY RRLEEKGYAT SIKNARKMVD QKQPEVWECL
EEVVKQHPVL LNRAPTLHRM SIQAFEPVLV EGKAIQLHPL VCPPFNADFD GDQMAVHVPL
GIEAQLESYI LILSTQNILS PANGRPIMLP SQDMVLGLFY ASNYVKGAKG EGKVFFSKED
AFLAFENKKI DIHAVIKVKI GDTFVETNIG RLLINEALPK GYRFVNEVLD KKSISKLIAD
IHKIYGSEIT AQTLDRLKEF GFEMATRAGI SIGIEDMKIP KAKKRLVDKA FHQMDEVLDQ
YRKGIITNKE RYNKTIDIWS QTTEDVTKAM FSEIEKSEQI ENGKKLPGLF NPIYMMANSG
ARGNKDQLRQ LAGMRGLMAK HSGEFIETPI TSNFREGLSV LEYFISTYGA RKGLADTALK
TSFAGYLTRR LVDVAQDMVI SEYDCGTKKY EVIEAIVESG EEKISLKERL IGRVLAEDIY
DPNSKELIAK ANDVLDEELT ARIQQAGVVQ VKARSVLNCE SENGICSMCY GWDLSQRKLV
SPGEAVGIIA AQSIGEPGTQ LTMRTFHIGG AATAQKVQSE LIIESSGIIK FQGLRLLKNR
NGGLINISQE GVIFVLDPNG RTIERHTVPY AAEILFKDGS EVKQGDIVAK WDPFNTYIIA
ESSGELVLKD IIVDVTVREE KDTLTGKTAI VVSFLRAKDA QLHSPRIVIK SEDGNEYSYD
LPVNSILNIP FEKLKTIWDK CLACSEAEKN DVQHNYYYLD KFVVHPGDII ARIPKETTKV
RDIVGGLPRV EELFEARKPK NPAIISEIDG IVKIYEDADE VMVISPKGTK KYDIKNEFIL
IKHGQEVKEG TKITDTIVSD VSGKAIVRAK GSKIVVYNKQ TGQEKVYSVP KGKFLQVKDG
DYVKVGDQLT DGTPLLEEIL KIKGIDELQK FLLKEVQMVY KLQGVDINDK HIEIIIRQML
RKRVIVDPGD SRFVANEEVD VIEFNKEVER IRKEDGKIPK AEPILVGITK AALSTKSWIS
AASFQETTRV LTEAASEGKV DDLSGIKENV IIGNLIPAGT GLEEYKNVKI EIAEHVTQFK
KQT
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