| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0258 |
|---|
| Symbol | rpoB |
|---|
| ID | 6743052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | + |
|---|
| Start bp | 227173 |
|---|
| End bp | 231585 |
|---|
| Gene Length | 4413 bp |
|---|
| Protein Length | 1470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 642750051 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_002120926 |
|---|
| Protein GI | 195952636 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0398012 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAT TAAAGCATGC TATACCAAGG AAATTTTTTG GTAGACGTAG TGAGCTTTTA
GATTTACCAT TTTTAGTTAA GGTCCCCACA GAATCTTTCG AAAATTTTAT TCAATTTAAC
GTGCCCCCGA CCAAAAGGAA GGAACAGGGT CTTGAGTATA TACTTAGAAC TTCATTTCCT
TTTCAAGATA CCAATAAAAA TATTACTGTG GAATATATAG GATATGAGAT TGGAAATTGG
GAATGTAACA AGTGCGGATA TAAACCGGAA ACGGATTTTT TAGCTGGTGC TGATACGGAA
TGTCCAAAAT GTAAAACAAT TCTTTCTTAT AAAGAAAAAT ATACGCCCGA AGAATGTAAA
GAAAAAGGAA TAACCTATAG TGCTCCTATA AGGATAATGT TAAGACTTAG AAAGAAGACA
AAATCAGGGG AGTTTGTAGA TACACCAAAG AAAATATACT TTGGCGAAAT GCCAATGATG
ACACCTATAG GCACTTTTGT TATAAATGGA AGTGAAAGAG TCGTTGTGAA CCAGCTTATA
AGATCACCGG GTATATTCTA TTCTGATAAG GAAGATAGGC AAAAAGAAGG TACTGTATCA
AGAACAATTT TTACAGCTAG CATACATCCA GACAAAGGTT CTCGTATAGA GTTTGAATTG
TCTACTAATT CAGATATAAT ATCTGCAAGA ATAGATAAAA AGCGTATAAG TGCCATTTCG
ATATTGAGGG CTTTTGGTTT GGAAACCGCT TACGATATAT TGTCTCAGTT TTATGAAGAT
GTTAAGGCTT TTAATGTGAA AGATGGTCTT ATAATCGATA AAAATACTGG AGAAGTATAT
AAACCGGAGG ACTTGGAATC TCATTATCTT TTTGCGGTTT TAAGATATAC CGCCAAGATA
GAAGGCACTG AGAAAGAAGA GGAGTTTATA GAAGAAAGGT ATATTGAAGA TTTAAATGTA
CTAAATAGGT TAATAAAAGA CGAAAGAGTA AAGATAGAGC TATTGACCGC AGTCCAATCA
GAGAAAACCA CCAAAAGCTT TTATGGAAAG ATAATTCTTG AAACTCTCAT AAACGATACA
AAAGCAAAGG ATCAGCATGG TAAGAGCTTG GTAAGAACCA ATTCTCAATT TACTTTAAGA
GACATAGGAT TAAGAGATAT ATATGTAAAG CTTAGATCTA TGGAAGGTCT CGTTCAGGAA
ATGGCTGATA TCATACAGCG CTCTAGAGCC TACTTTGAAG CTTACTTCCA GGATATCGCA
AGATTTGATC TGTCTAAAGT AGGTAGGGTT AAAATAAACG CCAAAATCTA TATACACAAA
AGAGAGCTTA CAGAAAAAGA CTTGGAAATT TTTGATGAGC TTCCGGTTTT AGAGTTGGCT
AAAGATTATG ATAACTACAA AGAAGGCACC ATCTTAACAA AGGATATTTT TGAGTATATC
TTAAAATCTC ATAAAACTAT AGAGGTAAGG GATTATACTG GCTTAGAAGC AAGGTTCTTA
AATCATAAAG ATCTGGTAAA TGCAATTAAA TATTTGTTAA AGGTAAGGTT TGGTAAGGAA
AAGAAAGATG ATATTGCTCA CCTCGGCAAC AGAAGAGTAA GACCGATAGG CGAGCTCTTA
GAAAACCAAG CTCGCATAGG CATAGCTAGA ATGTTGAAAT CCTTTAGGGA TAAAGTTGCT
ACGATAAACC CAGAAGATCC TACGATAAAA GCTCAAGACT TGGTAAACTC TAGATATCTT
GTATCTTCTA TGTTTGAATT TTTAAAAGGT GGTCAACTTT CTCAATATCT TGATAATTCA
AACCCTTTAT CTTCCTTAAC GCATAGAAGA AGATTATCTG CTTTGGGACC TGGTGGTTTA
ACCAGAGAGA GTGCTAAATT TGAAATAAGA GACGTTCATC CTTCTCACTA CGGTAGACTT
TGCCCTATAG AGACCCCTGA AGGTCAGAAT ATAGGTCTTG TGACTTCTAT GACCACTTAC
GCTCAAACCA ACGAGTACGG GTTCTTGGTA ACTCCTTATA GGAAAGTTGA GAACGGTATT
GTGACAGATC AAATAGAGTT TTTAGCTGCT TATGAAGAAG AAAACTTTGT AATAGCGCAA
AGCACCCCTA CAGATCAAAA AGGTAAGATA TTGGGCGATA GGTTAATAGC TCGTTATAAA
AATGATATTC AGATTGTAAA ACCATCCGAC GTAAACTATA TAGACGTTTC TCCAAGGCAA
ATAATATCGG TATCGGCTTC TCTGATTCCG TTTCTAGAAC ATGACGATGC AAATAGAGCT
TTGATGGGTT CCAACATGCA AAGACAGGCA GTACCTCTTA TATTTACACA AGCTCCTTTG
ATAGGTACAG GAATGGAATC AAAAGTGGCT ATAGATAGTG GTGCTGCCAT TTTAGCCAAA
AGAGGTGGTG TGGTAGAAGA GGTAGATTCA AATCGTATTG TTATAAGGGT AAATCCGAAT
GAGATAAATG AAAAAGACCC TCTTGATATG GGTATAGATG TTTATAAGCT TTTAAAATTT
ACAAAAACAA ACCAAAACAC ATCTGTAAAT CAAAGACCAA TAGTATATAA AGGTCAAAAG
ATAAAGAAGG GCGATTGTAT AGCAGATGGT CAATCTACCT TTATGGGTGA GTTGGCTCTT
GGAAAAGATT TGCTTGTTTG TTTTATGCCG TGGCGTGGTT ATAACTTTGA GGATGCTATA
GTAATATCGG AAAGATTGGT GAAAGAAGAT GTGCTTACTT CTGTTCATAT AGAAGAACTT
AAGGCAGAAG CCAGGGAAAC AAAGATAGGT GATGAAGAGA TAACTAGACA AGTGCCTGGG
GTATCAGAAA AAGCGTTGGC TTATCTTGAT GAGTACGGTA TAGTTAAGGT TGGTACATAT
GTAAAACCAG GCGATATATT GGTGGGTAAG GTTACTCCCA TTGGAGAAAC TCAGTTAACT
CCAGAGCAAA AACTCTTACA AGCTATCTTT GGTGAAAAGA CTAGAGATGT TAAAGACTCC
TCTCTAAGAT GCCCACCGGG TATTGAAGGT GTTGTGGTAG ATGTGCAGGT GTTTACCAGA
AAGTTAAGCG AAAGCAAGAA AAACCCTCTA GTAGAGCATG TAGAGCAAGA AGAGAAAAAC
CGCATAAAGA AAGAGAAAGA GTTCATGCTT AACCTAGTTA TAGAAAAGCG TAACGAGATA
GTAAAAGACC TTGTCATTGG TAAGGTTATA AACAAACCTA TAAAGTTGGC TAAAAAGACT
TACGAAGAGG GCACTGTAAT AGATGAAGCT CTTTTTGACA ACATAGCCAA TTTTGTTATA
ACGAAGCCAG AAAACTTTTT CTCCGATAAG AAGCTTATAA AGAAGATAGA AGAAATAAGA
GATAAAGCTC AAGCTCAACG TAAGGTTATA GATAAGATAT ACGAAGAAAA GATAGAAAAT
GTTGGAAAAC AAAGCGATTT ACCAAGCGGT GTGATAACGA TGGTAAAAGT CTACATAGCT
CAAAAGCGTA AAATAAGGGT AGGGGATAAA ATGGCTGGTA GACACGGGAA CAAAGGTGTT
ATATCTGTAG TGCTTCCAGT CGAAGATATG CCATTTTTAC CAGATGGTAC TCCCGTAGAC
GTAGTGTTGA ACCCTCTTGG TGTGCCATCT CGTATGAACG TTGGTCAAAT TTTGGAAACG
CATCTTGGAA TGGCTTCAAA ATACATAGGT AAGAAAGTTC AAGAGATGAT AGACGAATAT
TTTAATAGAG ACGAAATAAC GGAGTATATA GCTAGTATTT ACGCCATAGG TGATAAGAAC
AACGAGAATA AAAATTTCAT CAAGAACATG CTAAAAAGCT TATCCGATGA AGAGTTTAAA
AACGTTGTGA GTTTTGTTGC TCAAAACGGC ATTCCTATAG CTACTCCAGC TTTTGAAGGT
TGTAGCGAAG ATGACTTGAA AACGCTACTC AAAGAAGCTG GTTTGCCAGA GGATGGTAAA
TTTGTGTTGT ACGACGGTAG GACTGGTGAG CCTTTTGATT TTAGAGTTAC CACAGGTTAT
ATGCATATGT TGAAGTTGAT ACATATGGTA GAAGATAAGA TACATGCTCG TTCCACTGGT
CCTTACTCTT TAGTAACGCA GCAGCCTCTT GGAGGTAGGG CTCAATTTGG TGGTCAACGT
TTGGGTGAAA TGGAAGTGTG GGCGTTGGAG GCTCACGGTG CAGCTTATAC GTTACAAGAG
ATGCTAACGG TGAAATCCGA TGATATAGAA GGTAGAAATA GAGCTTATGA ATCTATAGTA
AAAGGTAAAT ATTTCTACTC ACCTGGTATA CCAGAATCTT TCAAAGTTTT AGTAAGAGAA
TTGAAATCGT TGGGACTAAA CGTTGTGTGT GAGAATGGAG AGGCTAAAAG CTGCGATAGT
GTTGATTTGG ATAAGAAAGA GGAGGAACGT TGA
|
|---|
| Protein sequence | MLKLKHAIPR KFFGRRSELL DLPFLVKVPT ESFENFIQFN VPPTKRKEQG LEYILRTSFP
FQDTNKNITV EYIGYEIGNW ECNKCGYKPE TDFLAGADTE CPKCKTILSY KEKYTPEECK
EKGITYSAPI RIMLRLRKKT KSGEFVDTPK KIYFGEMPMM TPIGTFVING SERVVVNQLI
RSPGIFYSDK EDRQKEGTVS RTIFTASIHP DKGSRIEFEL STNSDIISAR IDKKRISAIS
ILRAFGLETA YDILSQFYED VKAFNVKDGL IIDKNTGEVY KPEDLESHYL FAVLRYTAKI
EGTEKEEEFI EERYIEDLNV LNRLIKDERV KIELLTAVQS EKTTKSFYGK IILETLINDT
KAKDQHGKSL VRTNSQFTLR DIGLRDIYVK LRSMEGLVQE MADIIQRSRA YFEAYFQDIA
RFDLSKVGRV KINAKIYIHK RELTEKDLEI FDELPVLELA KDYDNYKEGT ILTKDIFEYI
LKSHKTIEVR DYTGLEARFL NHKDLVNAIK YLLKVRFGKE KKDDIAHLGN RRVRPIGELL
ENQARIGIAR MLKSFRDKVA TINPEDPTIK AQDLVNSRYL VSSMFEFLKG GQLSQYLDNS
NPLSSLTHRR RLSALGPGGL TRESAKFEIR DVHPSHYGRL CPIETPEGQN IGLVTSMTTY
AQTNEYGFLV TPYRKVENGI VTDQIEFLAA YEEENFVIAQ STPTDQKGKI LGDRLIARYK
NDIQIVKPSD VNYIDVSPRQ IISVSASLIP FLEHDDANRA LMGSNMQRQA VPLIFTQAPL
IGTGMESKVA IDSGAAILAK RGGVVEEVDS NRIVIRVNPN EINEKDPLDM GIDVYKLLKF
TKTNQNTSVN QRPIVYKGQK IKKGDCIADG QSTFMGELAL GKDLLVCFMP WRGYNFEDAI
VISERLVKED VLTSVHIEEL KAEARETKIG DEEITRQVPG VSEKALAYLD EYGIVKVGTY
VKPGDILVGK VTPIGETQLT PEQKLLQAIF GEKTRDVKDS SLRCPPGIEG VVVDVQVFTR
KLSESKKNPL VEHVEQEEKN RIKKEKEFML NLVIEKRNEI VKDLVIGKVI NKPIKLAKKT
YEEGTVIDEA LFDNIANFVI TKPENFFSDK KLIKKIEEIR DKAQAQRKVI DKIYEEKIEN
VGKQSDLPSG VITMVKVYIA QKRKIRVGDK MAGRHGNKGV ISVVLPVEDM PFLPDGTPVD
VVLNPLGVPS RMNVGQILET HLGMASKYIG KKVQEMIDEY FNRDEITEYI ASIYAIGDKN
NENKNFIKNM LKSLSDEEFK NVVSFVAQNG IPIATPAFEG CSEDDLKTLL KEAGLPEDGK
FVLYDGRTGE PFDFRVTTGY MHMLKLIHMV EDKIHARSTG PYSLVTQQPL GGRAQFGGQR
LGEMEVWALE AHGAAYTLQE MLTVKSDDIE GRNRAYESIV KGKYFYSPGI PESFKVLVRE
LKSLGLNVVC ENGEAKSCDS VDLDKKEEER
|
|---|
| |