| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0077 |
|---|
| Symbol | |
|---|
| ID | 6742860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 69216 |
|---|
| End bp | 70184 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 642749861 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_002120747 |
|---|
| Protein GI | 195952457 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATGCTA TGAACGTAAA AAGGCTTCTT GGTTTGGGGC TTTTATCAAT AATACTTAGC
TCTTGCAGTG CAGAGATTAC AAACGCATCT TTATATGGAA ACAACTACGC TTACAAAAAG
CCAAACTACG TAAGCTATGA AAGACCCCAA ATAAGCCATC GTCCCATATA TCAAAACAAC
CCTCAATTTC TAAATCTTGT ATATACACAA GATGTTAAAA AGTATATAAA CTACTTTTTA
TACCAAGATA GAGGTTTTAT AGAAAGGGGC ATAGAAAAAG CCATTTACTA CTCTCCTATA
ATATTACCAA TACTTAAAAA GTACAACCTT CCATCGGATT TTATATACCT TCCCATCATA
GAAAGTGGAT ATAATCAATA TTCTGTGTCA AGCACCGGAG CAGCCGGTAT ATGGCAGTTA
ATGCCTCAAA CAGCAAGAGA TTACGGTCTT ATAGTAAACA ATCAAATAGA CGAGAGGTTT
GATATTATAA AAGCTACCCA AGCTGCAGCC CATTATCTTA GCGATTTATA CAATCAGTTT
GGAGATTGGA ACAAGGTTTT AGCTGCTTAC AACTGCGGTC CTTATTGTGT ATCGTCGGTG
TTTAAACAAG ACCCAAGGGG AAGTTTTTGG GCTTTTCAAA GTTCGTTTCC GCCAGAAACT
CAGCAATATG TACCAAGATT TTTAGCGCTT TTAGATATCA TAAAAAATGC AAAATATTTT
GGTATAAAAG TAAAGAAGCA ATACTTTAAC TATACGCTTC ATATATATAG ACCAAATTCC
CCGCAAGAGC TTAGAAATAT AGCTCTAGCC TACAACGTAA ACTATTATCT CTTGAAAAGG
TTGAACCCTC AAATAAAACA AGGTTTAGTC CCGGCTGGTG GCTACGTTTA TATACCGTCC
TTTGGAAAAC CAATTTACAG AGAAGCTTCC ACAGATGACT CTATAAAAAG ATTAATAGCA
GGTGAATGA
|
|---|
| Protein sequence | MYAMNVKRLL GLGLLSIILS SCSAEITNAS LYGNNYAYKK PNYVSYERPQ ISHRPIYQNN
PQFLNLVYTQ DVKKYINYFL YQDRGFIERG IEKAIYYSPI ILPILKKYNL PSDFIYLPII
ESGYNQYSVS STGAAGIWQL MPQTARDYGL IVNNQIDERF DIIKATQAAA HYLSDLYNQF
GDWNKVLAAY NCGPYCVSSV FKQDPRGSFW AFQSSFPPET QQYVPRFLAL LDIIKNAKYF
GIKVKKQYFN YTLHIYRPNS PQELRNIALA YNVNYYLLKR LNPQIKQGLV PAGGYVYIPS
FGKPIYREAS TDDSIKRLIA GE
|
|---|
| |