| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A4844 |
|---|
| Symbol | |
|---|
| ID | 6516634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 4701155 |
|---|
| End bp | 4703584 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642749775 |
|---|
| Product | outer membrane usher protein SfmD |
|---|
| Protein accession | YP_002117504 |
|---|
| Protein GI | 194737814 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAAAATG ATGAACCGGG CGTGGAGAAT GTCGATCTAT CGGTTTTCGA AAAGGGGGGG
CAGGCAGAAG GCACCTATAA CGTTGATATT TATATTAATA ACACCAATGT TGAAACAAAA
AATATTGCCT TTAAAAATAA AAAATCAGCA GATAATAAGC TCTCCCTACA GCCGTGTCTT
AGCGTTGAAC AACTCAAGCA GTGGGGCGTA AAAACAGAAA ACTTCCCCGA GCTTCAAAAT
GACCCAAACG GGTGTACCGA TCTTAGTCTG CTGGCTGGCG CTGTAGCAAA GTTTAATGTC
ATCGGTAACC GGCTGGATTT AGCGATCCCT CAAATCGCGT TGATCGCCGA CCCGCGAGAA
TTCGTCCCTA CCAGCGAATG GGATGAAGGC ATTAATGCTT TTTTGCTGAA TTACAGTTTT
ACCGGATCGC AGGATCACGA TATTGATGAA AACCGGACGG AAAATAGCGA ATACGCTAAC
CTGCGCCCAG GTATTAACAT TGGCGCATGG CGTTTTCGTA ACTACTCAAC CTGGAATCAT
GATAGCGATG GGCAAAATAG CTGGGATTCT GCCTACACCT ATGTTTCTCG CGATATCGAA
TTTTTAAAAG GACAGCTGAT CGCTGGGGAA AATAACACGC CAGCGGACGT CTTTGACAGT
ATTTCATTTA AGGGCGTACA GATCTCTTCT GATGACGATA TGTTGCCGGA CAGTATGAAA
GGGTTCGCCC CGGTCATTCG CGGGGTGGCC AAAAGCAGCG CGCAGGTAAC CGTTGAACAA
AACGGTTATA CCATCTACAA AACTAACGTT CCGGCGGGTC CATTCGCCAT TAATGATCTT
TATCCAACCG GCGGTTCGGG CGACCTGTAC GTCACCATCA AAGAATCCGA TGGTTCTGAA
CAGCATTTCA TTGTGCCCTA CGCCAGCGTT CCGGTATTAC AGCGTGAAGG CCACCTGAAA
TACGACCTGA CGGTAGGCCG CACGCGTTCA TCAGATACGC ATTCCGCGCA ACAGAATTTC
GCAGAACTGA CGGCCTTATA CGGATTAGCA GGCGGCATAA CCGCCTATGG CGGAATAGAG
AGTACGCTGA GCAATGATAT TTATCATGCG GCGCTCATCG GGACAGGCTT AAACCTTGGC
GATCTGGGCG CATTGTCTTT AGACGTCACC AATTCATGGT CAAAAATTAA AGCAGGCGAT
GTGGTTAGCG ATACGCTTAC CGGACAGTCC TGGCGTATTC GTTACAGCAA AGATATTCAG
TCAACAGGCA CCAATTTCAC TGTCGCTGGC TACCGTTATT CGACCAAAGA TTACTACGCT
CTTGAGGATG TGCTGGATAC CTATAGCGAT AATAGTCACT ATGATCATGT ACGTAATCGC
ACCGACCTGT CGTTATCGCA AGACATTATC TACGGTTCCA TTTCACTCAC TTTATATAAT
GAAGATTACT GGAATGACAC TCATACCACA TCATTAGGTA TTGGCTATAA CAACACATGG
CATAACGTAA GCTATGGCAT TAACTATTCT TATACGCTGA ACGCCGATAA TTCTCAGGAT
GAAGACGACG ATACGGAAGA CAGTAATGAC CAGCAAATTT CAATCAATAT TAGTATTCCG
TTAGATGCCT TTATGCCGTC AACGTATGCC ACCTACAATA TGAACTCCGC GAAAGACGGC
GATACCACGC ACACTGTCGG TTTAAACGGA ACAGCGCTGG CACAGAAAAA TCTCTCATGG
AGCGTTCAGG AAGGTTATTC CTCTCAAGAG AAAGCCACCA GCGGTAATGT GAGCGCAACC
TATAACGGGA CGTATGCGGA TATTAACGGC GGGTATAGCT ACGATAATCA TATGCGTCGC
CTGAATTATG GCGTTCAGGG CGGCGTACTA CTACATCGAA ATGGCCTGAC ACTATCCCAG
CCAATGGACG ACACCATCAT ATTGGTTAAA GCCCCTGGCG CAGCGGGTGT CCCCGTGAAT
AACGAAACGG GCGTGGACAC CGATTTTCGG GGCTATGCCG TCGTACCTTA TGCTTCGCCT
TACCATCGTA ATGAAGTGTC TTTAGATACG ACTGGCATTA GAAAAAATAT TGAGCTCATT
GATACCAGTA AAACGCTGGT GCCTACCCGT GGCGCGGTGG TCAGGGCTGA ATATAAAACC
AATATTGGTT ACAAGGCATT GATGGTATTA ACCCGCATAA ACAATCTGCC TGTTCCTTTT
GGCGCGACCG TCTCGTCTTT AACAAAACCA GACAATCACA GCAGTTTTGT TGGTGATGCG
GGGCAGGCCT GGTTAACCGG ACTGGAAAAA CAAGGGCGGT TATTAGTGAA GTGGGGACCA
ACAGCAGCAG ACCGGTGTCA GGTCTCTTAT CGTATACCGA GCTCCCCCTC CGCTTCTGGC
GTAGAAATCT TACACGAGCA ATGCCAGTGA
|
|---|
| Protein sequence | MENDEPGVEN VDLSVFEKGG QAEGTYNVDI YINNTNVETK NIAFKNKKSA DNKLSLQPCL
SVEQLKQWGV KTENFPELQN DPNGCTDLSL LAGAVAKFNV IGNRLDLAIP QIALIADPRE
FVPTSEWDEG INAFLLNYSF TGSQDHDIDE NRTENSEYAN LRPGINIGAW RFRNYSTWNH
DSDGQNSWDS AYTYVSRDIE FLKGQLIAGE NNTPADVFDS ISFKGVQISS DDDMLPDSMK
GFAPVIRGVA KSSAQVTVEQ NGYTIYKTNV PAGPFAINDL YPTGGSGDLY VTIKESDGSE
QHFIVPYASV PVLQREGHLK YDLTVGRTRS SDTHSAQQNF AELTALYGLA GGITAYGGIE
STLSNDIYHA ALIGTGLNLG DLGALSLDVT NSWSKIKAGD VVSDTLTGQS WRIRYSKDIQ
STGTNFTVAG YRYSTKDYYA LEDVLDTYSD NSHYDHVRNR TDLSLSQDII YGSISLTLYN
EDYWNDTHTT SLGIGYNNTW HNVSYGINYS YTLNADNSQD EDDDTEDSND QQISINISIP
LDAFMPSTYA TYNMNSAKDG DTTHTVGLNG TALAQKNLSW SVQEGYSSQE KATSGNVSAT
YNGTYADING GYSYDNHMRR LNYGVQGGVL LHRNGLTLSQ PMDDTIILVK APGAAGVPVN
NETGVDTDFR GYAVVPYASP YHRNEVSLDT TGIRKNIELI DTSKTLVPTR GAVVRAEYKT
NIGYKALMVL TRINNLPVPF GATVSSLTKP DNHSSFVGDA GQAWLTGLEK QGRLLVKWGP
TAADRCQVSY RIPSSPSASG VEILHEQCQ
|
|---|
| |