| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A3947 |
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| Symbol | ligB |
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| ID | 6515809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | - |
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| Start bp | 3816318 |
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| End bp | 3818003 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642748919 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_002116682 |
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| Protein GI | 194734322 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00109468 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGATTAT GGAAAAGTAT GGCGTGGGGA ATTTTATTGT GGCATTCGCA GAGTGGGGCG
CTTTGCCCGG CCTGGCCGCC AGCAAGGGCC GCTGAAGAAA TCGCCCGTTT ACAGCAACAG
CTCGCTGACT GGAATGACAT TTACTGGAAA CAAGGCGTTA GCGCGGTTGA CGATAGTGTG
TACGACCAAC TCAGCGCAAG GCTGGTTCAG TGGCAACGCT GTGTTGGTCA GGATGTTTCA
TCTACTCCGG TTTCACCGCC GTTAAACGGT ACAACAATGC ATCCTGTTGC GCATACGGGC
GTACGTAAAC TCGCGGACCG GCAGGCGGTA GAACAGTGGA TGCGCGGGCG CAGCGAGCTT
TGGGTACAAC CAAAAGTGGA TGGCGTAGCG GTAACGCTGG TTTATCAAAA CGGTAAACTG
GCCAGGGCTA TCAGCCGAGG TAACGGACTA CAAGGCGAGG ACTGGACGCC AAAAATTCGC
CTGATCCCCT CTATACCGCA GACAACACAA GGCGCGCTTG CTAACGCGGT GTTGCAGGGC
GAAATCTTTC TACAGCGCGA GGGGCATATC CAGCAACGGA TGGGCGGGAT GAATGCGCGC
TCGAAAGTCG CAGGAATGTT AATGCGCCAG GATAACGCCT CCGCGCTAAA TTCGTTGGGT
ATTTTTATTT GGGCGTGGCC GGACGGTCCG GCAAATATGC CCGAAAGATT AAGCCAACTT
GCTAAGGCTG GATTCAGTCT GACGAAGAAA TATACCCTGG CGGTAAAAGA TGCCAGCGAG
GTCGAGCGGG CGCGCCAGTC ATGGCTGACG TCAGCGTTGC CCTTTGTGAC GGATGGCGTA
GTGATACGCA TGGCTAAAGA GCCCGCGGCA CAATACTGGC GACCCGGGCA GGGCGACTGG
CTGGCAGCAT GGAAATATCC GCCAGTAGCG CAGGTCGCGC AAGTGAGCGC TATTCAGTTC
TCGGTGGGGA AAAGCGGCAA AATTACCGTA GTAGCGTCGC TTGTCCCCGT TATATTGGAT
GATAAGCGGG TTCAGCGGGT CAATATCGGC TCTGTGAAAC GTTGGGAAGC GTGGGATATC
GCGCCGGGCG ATCAGATCCT GGTGAGTCTG GCCGGGCAAG GCATTCCCCG GCTTGATGAG
GTCGTCTGGC GGAGTCGTGA GCGGAGTAAG CCTGTACCGC CTGATAGCCA TTTCAACTCG
CTGACCTGCT TTTACGCGTC GGCAACGTGT CAGGAACAGT TTATCTCCAG GCTGGTATGG
CTGGGATCAC GATCGGCGTT GGGTCTGGAC GGAATGGGCG AAGCCAGCTG GCGGGCCTTG
CATCAGACGC ATCGCTTTGA GCATATCTTC TCCTGGCTTG CCCTGACGTC AGCGCAAATA
GCCAACACGC CAGGCTTTGC TAAAGGAAAA AGCGAGCAGA TATGGCGGCA ATTTAACCTG
GCGCGCCGGC AGTCGTTTAC CCGCTGGATC ATGGCGATGG ATATCCCCTT AACGCAGGCC
GCATTACAGG CCAGCGGCGA TCGTTCATGG GAGCAGTTAT TAATGCGAAC AGAGCAACAC
TGGCGGCAGT TGCCAGCGAC GGGCGAGCGC CGTGCCGGGA GAGTTATCGA CTGGCGGGAT
AATCCGCAGA TCAAAGCGCT GAGCAGATGG CTGTCTGCTC AGCATATTCC CGGATTTGGG
TCTTAG
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| Protein sequence | MRLWKSMAWG ILLWHSQSGA LCPAWPPARA AEEIARLQQQ LADWNDIYWK QGVSAVDDSV
YDQLSARLVQ WQRCVGQDVS STPVSPPLNG TTMHPVAHTG VRKLADRQAV EQWMRGRSEL
WVQPKVDGVA VTLVYQNGKL ARAISRGNGL QGEDWTPKIR LIPSIPQTTQ GALANAVLQG
EIFLQREGHI QQRMGGMNAR SKVAGMLMRQ DNASALNSLG IFIWAWPDGP ANMPERLSQL
AKAGFSLTKK YTLAVKDASE VERARQSWLT SALPFVTDGV VIRMAKEPAA QYWRPGQGDW
LAAWKYPPVA QVAQVSAIQF SVGKSGKITV VASLVPVILD DKRVQRVNIG SVKRWEAWDI
APGDQILVSL AGQGIPRLDE VVWRSRERSK PVPPDSHFNS LTCFYASATC QEQFISRLVW
LGSRSALGLD GMGEASWRAL HQTHRFEHIF SWLALTSAQI ANTPGFAKGK SEQIWRQFNL
ARRQSFTRWI MAMDIPLTQA ALQASGDRSW EQLLMRTEQH WRQLPATGER RAGRVIDWRD
NPQIKALSRW LSAQHIPGFG S
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