Gene SeSA_A3920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3920 
Symbol 
ID6519752 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp3792034 
End bp3792831 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content46% 
IMG OID642748893 
Productlipopolysaccharide core biosynthesis protein RfaP 
Protein accessionYP_002116656 
Protein GI194736857 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.773448 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.00444896 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTTGAGC TGAAAGCGCC GTTAACCACA CTATGGCGCG GTAAAGATGC TTTTGAGGAA 
GTGAAAACGT TACAGGGCGA AGTGTTCAGA GAGCTGGAGA CGCGTCGAAC ATTGCGGTTT 
GAGCTGGACG GCAAAAGCTA CTTCCTGAAG TGGCATAAAG GCACTTCGCT GAAAGAAATT 
GTGAAGAACC TGATTTCGTT ACGTATGCCT GTTCTGGGCG CTGACAGAGA ATGGCACGCC 
ATTCATCATC TACATGAGCT GGGCGTTGAT ACGATGCACG GCGTTGGTTT TGGTGAAAAA 
GGCGTAAATC CGCTAACCAG AACATCATTT ATTATCACCG AAGATTTAAC GCCCACGATT 
AGCCTTGAAG ACTACTGTGC TGACTGGGCT GTTAATCCAC CGGACGCGCA GGTGAAGTGG 
ATGATCATTA AGCGTGTTGC GACTATGGTA CGTAAAATGC ACGCCGGGGG AATTAACCAT 
CGTGACTGTT ATATTTGCCA CTTTCTTCTG CATTTACCTT TCACAGGTCG TGAAGAGGAT 
TTAAAAATCT CCGTAATCGA CCTGCATCGC GCGCAGATAC GTCAGCACGT TCCCCTTCGC 
TGGCGTGACA AGGATTTAAT TGGGCTTTAT TTTTCTTCAA TGAATATTGG CCTGACTCAG 
CGAGATATAT TCCGGTTTAT GCGTGAGTAT TTCTCTCTCC CCCTGCGAGA GATTTTGCAC 
AAAGAATCGG GGTTGATTCA TCAGGCGGAT GTTAAAGCCG CTCGAATTAA AGAAAGAACA 
ATAAGAAAAA ATCTTTAA
 
Protein sequence
MVELKAPLTT LWRGKDAFEE VKTLQGEVFR ELETRRTLRF ELDGKSYFLK WHKGTSLKEI 
VKNLISLRMP VLGADREWHA IHHLHELGVD TMHGVGFGEK GVNPLTRTSF IITEDLTPTI 
SLEDYCADWA VNPPDAQVKW MIIKRVATMV RKMHAGGINH RDCYICHFLL HLPFTGREED 
LKISVIDLHR AQIRQHVPLR WRDKDLIGLY FSSMNIGLTQ RDIFRFMREY FSLPLREILH 
KESGLIHQAD VKAARIKERT IRKNL