Gene SeSA_A3857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3857 
SymbolxylA 
ID6519040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp3724661 
End bp3725983 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content54% 
IMG OID642748830 
Productxylose isomerase 
Protein accessionYP_002116593 
Protein GI194734530 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2115] Xylose isomerase 
TIGRFAM ID[TIGR02630] xylose isomerase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCTT ATTTTGACCA ACTCGATCGT GTTCGCTATG AAGGCCCTCA ATCGACTAAC 
CCGCTGGCAT TTCGTCATTA CAATCCCGAC GAGCTGGTTT TAGGTAAACG TATGGAAGAT 
CACCTGCGTT TCGCGGCCTG TTACTGGCAT ACCTTCTGCT GGAACGGCGC GGATATGTTT 
GGTGTAGGCG CGTTTAATCG TCCGTGGCAG CAACCGGGCG AAGCGCTGGA GCTGGCGAAA 
CGCAAAGCGG ACGTGGCGTT TGAATTTTTC CACAAACTGA ATGTGCCTTT TTATTGCTTC 
CATGACGTGG ATGTGTCGCC GGAAGGCGCG TCGTTGAAAG AATATAAAAA CAACTTCGCG 
CAGATGGTGG ATGTGCTGGC GGCGAAACAG GAGCAGAGCG GCGTAAAACT GCTGTGGGGA 
ACAGCGAACT GCTTTACCAA CCCGCGCTAT GGCGCAGGCG CCGCCACTAA CCCGGACCCG 
GAGGTCTTTA GCTGGGCAGC GACGCAAGTG GTTACGGCAA TGAACGCCAC GCATAAACTG 
GGCGGCGAAA ATTACGTCCT GTGGGGCGGG CGCGAAGGTT ATGAAACGTT GCTGAATACC 
GATCTGCGCC AGGAACGCGA ACAGATTGGC CGCTTTATGC AAATGGTGGT CGAGCACAAA 
CATAAAATGG GTTTCCAGGG CACGCTGCTG ATTGAACCGA AACCGCAGGA ACCGACAAAA 
CATCAGTATG ATTATGACGT TGCAACGGTC TATGGCTTCC TCAAACAGTT CGGCCTGGAA 
AAAGAGATCA AAGTGAACAT TGAGGCGAAC CACGCGACGC TGGCGGGTCA TTCGTTCCAC 
CATGAAATCG CGACCGCTAT CGCGCTGGGT ATTTTTGGCT CCGTTGACGC CAACCGCGGC 
GATGCGCAAC TGGGCTGGGA TACCGATCAG TTCCCGATTA GCGTTGAAGA GAACGCGCTG 
GTGATGTACG AAATCCTGAA AGCGGGCGGA TTCACGACGG GCGGTCTCAA CTTCGACGCC 
AAAGTTCGTC GCCAGAGCAC CGATAAATAC GATCTGTTCT ACGGTCATAT CGGCGCGATG 
GATACGATGG CGTTGTCGCT GAAAATCGCC GCGCGTATGG TTGAAGACGG CGAGCTGGAT 
AAACGCGTGG CGAAGCGCTA TGCCGGCTGG AATGGCGAGC TGGGTCAGCA GATTCTGAAA 
GGACAACTCT CCTTAGGCGA ACTGGCGCAG TATGCGGAGC AGCATAATCT GGCGCCAGTA 
CATCAAAGCG GTCATCAGGA GCTGTTAGAA AATCTGGTTA ACCGTTATCT GTTTGATAAA 
TAA
 
Protein sequence
MQAYFDQLDR VRYEGPQSTN PLAFRHYNPD ELVLGKRMED HLRFAACYWH TFCWNGADMF 
GVGAFNRPWQ QPGEALELAK RKADVAFEFF HKLNVPFYCF HDVDVSPEGA SLKEYKNNFA 
QMVDVLAAKQ EQSGVKLLWG TANCFTNPRY GAGAATNPDP EVFSWAATQV VTAMNATHKL 
GGENYVLWGG REGYETLLNT DLRQEREQIG RFMQMVVEHK HKMGFQGTLL IEPKPQEPTK 
HQYDYDVATV YGFLKQFGLE KEIKVNIEAN HATLAGHSFH HEIATAIALG IFGSVDANRG 
DAQLGWDTDQ FPISVEENAL VMYEILKAGG FTTGGLNFDA KVRRQSTDKY DLFYGHIGAM 
DTMALSLKIA ARMVEDGELD KRVAKRYAGW NGELGQQILK GQLSLGELAQ YAEQHNLAPV 
HQSGHQELLE NLVNRYLFDK