| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A3260 |
|---|
| Symbol | speA |
|---|
| ID | 6516959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 3148924 |
|---|
| End bp | 3150822 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642748260 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_002116034 |
|---|
| Protein GI | 194735932 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.55052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCC AGGAAGCCAG CAAGATGCTG CGCACTTACA ATATTGCCTG GTGGGGCAAT
AACTACTACG ACGTCAACGA GCTGGGCCAT ATTAGCGTAT GCCCCGATCC CGACGTACCG
GAAGCGCGTG TCGATCTTGC CAAACTGGTG AAAGCGCGCG AAGCGCAAGG TCAGCGTCTG
CCGGCGCTGT TTTGCTTCCC GCAGATCCTG CAACACCGTT TGCGTTCAAT TAACGCGGCG
TTTAAGCGTG CGCGTGAATC TTACGGTTAT AACGGCGACT ACTTCCTCGT TTATCCGATT
AAGGTCAATC AGCATCGCCG CGTGATCGAG TCCCTTATCC ATTCCGGTGA ACCGTTGGGG
CTGGAAGCGG GGTCAAAAGC GGAATTGATG GCGGTGCTGG CGCATGCCGG CATGACCCGT
AGCGTGATCG TCTGTAATGG TTATAAAGAC CGTGAATACA TTCGGCTGGC GCTGATTGGC
GAGAAGATGG GCCATAAGGT TTATCTGGTC ATCGAAAAGA TGTCTGAAAT CGCGATTGTG
CTGGAAGAAG CCGAGCGCCT GAACGTGGTT CCTCGTCTGG GCGTGCGTGC GCGTCTGGCC
TCTCAGGGAT CCGGTAAGTG GCAATCCTCC GGCGGCGAAA AATCAAAATT CGGCCTGGCG
GCGACCCAGG TGCTGCAACT GGTGGAGACC CTGCGTGACG CCGGGCGCCT GGACAGTTTG
CAACTGTTGC ACTTCCACCT GGGATCGCAG ATGGCGAACA TTCGCGATAT CGCGACCGGC
GTGCGCGAGT CCGCGCGTTT CTATGTTGAG CTGCATAAGC TGGGCGTGAA TATCCAGTGC
TTCGACGTGG GCGGCGGTCT GGGCGTGGAT TATGAAGGTA CCCGCTCGCA GTCCGACTGT
TCGGTGAACT ATGGCCTGAA CGAATATGCC AATAACATCA TCTGGGCGAT TGGCGATGCC
TGCGAAGAGC ATGGTTTACC GCATCCGACG GTGATTACCG AGTCTGGCCG CGCCGTCACT
GCGCACCATA CGGTACTGGT CTCTAACATT ATCGGCGTGG AGCGTAACGA ATACACGGAT
CCGACTGCCC CTGCTGAAGA TGCGCCGCGC GCGCTGCAAA ATCTCTGGGA AACCTGGCAG
GAGATGCATA AGCCTGGCAC CCGCCGCTCG CTGCGTGAAT GGCTGCATGA TAGCCAAATG
GATCTGCACG ATATTCATAT CGGCTACTCT TCCGGCGCGT TTAGTTTGCA GGAGCGCGCC
TGGGCGGAGC AACTTTATCT CAGCATGTGC CATGAAGTGC AGAAGCAACT GGACCCGCAA
AACCGTGCGC ATCGTCCGAT TATCGACGAA CTGCAAGAGC GAATGGCGGA CAAAATGTAC
GTCAACTTCT CGCTGTTCCA GTCAATGCCG GACGCGTGGG GAATCGATCA GCTCTTCCCG
GTACTGCCGC TGGAAGGGTT AGATCAGGTA CCGGAACGTC GTGCCGTGCT GCTGGATATT
ACTTGTGATT CCGATGGCGC TATTGACCAC TATATCGATG GCGACGGTAT CGCCACGACG
ATGCCGATGC CGGAATACGA TCCAGAGAAT CCGCCGATGC TCGGCTTCTT TATGGTCGGC
GCTTATCAGG AGATCCTCGG TAACATGCAC AACCTGTTTG GCGATACTGA AGCGGTTGAC
GTGTTTGTCT TCCCGGATGG TAGCGTCGAG GTTGAGCTGT CGGACGAAGG CGATACCGTT
GCGGATATGC TGCAATATGT GCAACTGGAT CCGAAAACGC TGTTAACGCA TTTCCGCGAC
CAGGTAAAAC AGACGGATCT GGACGATGCG TTGCAGCAGC AGTTCCTTGA GGAATTTGAA
GCGGGACTGT ACGGTTATAC TTATCTTGAA GATGAGTAG
|
|---|
| Protein sequence | MSSQEASKML RTYNIAWWGN NYYDVNELGH ISVCPDPDVP EARVDLAKLV KAREAQGQRL
PALFCFPQIL QHRLRSINAA FKRARESYGY NGDYFLVYPI KVNQHRRVIE SLIHSGEPLG
LEAGSKAELM AVLAHAGMTR SVIVCNGYKD REYIRLALIG EKMGHKVYLV IEKMSEIAIV
LEEAERLNVV PRLGVRARLA SQGSGKWQSS GGEKSKFGLA ATQVLQLVET LRDAGRLDSL
QLLHFHLGSQ MANIRDIATG VRESARFYVE LHKLGVNIQC FDVGGGLGVD YEGTRSQSDC
SVNYGLNEYA NNIIWAIGDA CEEHGLPHPT VITESGRAVT AHHTVLVSNI IGVERNEYTD
PTAPAEDAPR ALQNLWETWQ EMHKPGTRRS LREWLHDSQM DLHDIHIGYS SGAFSLQERA
WAEQLYLSMC HEVQKQLDPQ NRAHRPIIDE LQERMADKMY VNFSLFQSMP DAWGIDQLFP
VLPLEGLDQV PERRAVLLDI TCDSDGAIDH YIDGDGIATT MPMPEYDPEN PPMLGFFMVG
AYQEILGNMH NLFGDTEAVD VFVFPDGSVE VELSDEGDTV ADMLQYVQLD PKTLLTHFRD
QVKQTDLDDA LQQQFLEEFE AGLYGYTYLE DE
|
|---|
| |