Gene SeSA_A2960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A2960 
Symbol 
ID6517068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp2866767 
End bp2867951 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content59% 
IMG OID642747986 
Productmajor facilitator family transporter 
Protein accessionYP_002115768 
Protein GI194737719 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0152929 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAAAC CCACTCATGG GCTTAGCCCG GCGCTGATCG TTTTAATGTC TGTCGCCACG 
GGTCTGGCGG TCGCCAGCAA CTACTACGCC CAGCCGCTGC TTGATACCAT CGCGCATCAC 
TTTTCGCTTT CCGCCAGCTC CGCAGGGTTT ATCGTTACCG CCGCGCAGTT GGGCTATGCC 
GCTGGCCTGT TGTTTCTGGT GCCGCTCGGC GACATGTTTG AACGCCGAAC GCTGATTGTC 
TCCATGACGT TGCTGGCGGC TGGCGGAATG CTGATCACCG CCAGCAGTCA GTCGCTTAGC 
ATGATGATAC TCGGAACGGC CTTAACCGGA CTGTTCTCCG TGGTGGCGCA GATTCTGGTT 
CCGCTGGCCG CCACGCTTGC GACGCCCGCC ACCCGCGGTA AAGTGGTCGG CACCATTATG 
AGCGGCCTGT TGCTGGGGAT CCTGCTGGCG CGAACGGTCG CCGGACTGCT GGCAAACCTC 
GGCGGTTGGC GCACCGTATT TTGGGTAGCG TCGGCGCTGA TGGCGCTGAT GGCCGTCGCG 
TTGTGGCGCG GACTGCCAAA ACTCAAATCC GACACCCATC TTAACTACCC GCAACTGTTG 
GGTTCTGTAT TCAGCCTGTT TATTCACGAT AAGCTGCTGC GTACCCGCGC GCTGCTGGGC 
TGTCTGACCT TTGCTAATTT CAGCATCCTC TGGACGTCAA TGGCCTTTTT GCTCGCCGCG 
CCGCCGTTTG GCTACTCCGA GGGAATGATT GGCCTGTTTG GCCTGGCGGG GGCCGCCGGC 
GCTTTAGGCG CGCGTCCGGC GGGCGGATTT GCCGATAAAG GTAAATCTCA CCTCACCACC 
ACGTTCGGCT TACTGCTGCT GTTACTCTCC TGGTTGGCTA TCTGGCTTGG GCACACCTCG 
GTACTGGCGC TGATTATTGG CATTCTGGTA CTGGACCTCA CCGTTCAGGG GGTACATATC 
ACCAATCAGA CGGTCATCTA TCGTTTGCAT CCGGGTGCGC GTAACCGGCT CACCGCCGGC 
TATATGACCA GCTACTTTAT CGGTGGCGCC GCGGGGTCGC TGATTTCCGC CTCCGCCTGG 
CAACATGCTG GCTGGGCCGG CGTTTGTCTG TCGGGTGTCA CGGTAGCCTT ACTTAATTTA 
CTGGTCTGGT GGCGAGGTTT TCACCGACAG GAAGCCGTAA ATTAA
 
Protein sequence
MTKPTHGLSP ALIVLMSVAT GLAVASNYYA QPLLDTIAHH FSLSASSAGF IVTAAQLGYA 
AGLLFLVPLG DMFERRTLIV SMTLLAAGGM LITASSQSLS MMILGTALTG LFSVVAQILV 
PLAATLATPA TRGKVVGTIM SGLLLGILLA RTVAGLLANL GGWRTVFWVA SALMALMAVA 
LWRGLPKLKS DTHLNYPQLL GSVFSLFIHD KLLRTRALLG CLTFANFSIL WTSMAFLLAA 
PPFGYSEGMI GLFGLAGAAG ALGARPAGGF ADKGKSHLTT TFGLLLLLLS WLAIWLGHTS 
VLALIIGILV LDLTVQGVHI TNQTVIYRLH PGARNRLTAG YMTSYFIGGA AGSLISASAW 
QHAGWAGVCL SGVTVALLNL LVWWRGFHRQ EAVN