Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A2887 |
Symbol | |
ID | 6519055 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 2791719 |
End bp | 2793128 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642747919 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_002115701 |
Protein GI | 194738230 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.415153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.13847 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGAAGAG TCGCGCCTGT CGCCATCGTA CTGGCATTTG CTTTGTTTCA TCACCAGCCC CGGGGCGCAG AAGCGCCGCC AATGATTACA TCCGAAGGAT TAGCAACGGA CCAGATGCTT CCTTCGCTGG ATGGCTCCGC CGCTGAGTTG CCGCTCAGCG CCGCCGCGCC GGGCAACCTG ACGCTCAATG ACGCGGTCAA TCGCGCCGTT AGCTGGCATC CTTCTATTCG CGAAGCCGTC GGCAAACTGC TCGCACAGAA TGAACAAATA GAGGTCGCCA AATCGAAATA TTATCCGCAA GTCAGCGCTG GTGTGAACAA TGGGTACAGC AATACCTACA CCGATCACGG GTATAGTCCC TCGCTGGTGC TGTCGGTATC GCAAATGCTT TATGACTTCG GCAAAGTGGC AAGCCAGGTT CGCGCCGAAA CCGCAGGCGC AGCGCAGCAA CAGGCCAATG TGTTGCTCAG TATTGATACC GTCGCGCACG AAACCGCCAA CGCCATTGTA CAAACGCAGA GCTGGCAGCA AATGGTAGAA GCGGCGGAAG AACAGCTCGT CGCGCTGGAC AGCATCGGTA AACTTATCCG GCAGCGCAGC GATGAAGGCG CTACGTCGCT ATCTGACGTA GTGCAAACCG AAGCCAGAAT CGAATCCGCC CGCTCGCAAC TGGCGCAGTA TCAGGCCAAT CTCGGCAGTG CGAAAGCCTC ACTGATGAGC TGGCTGGGCT GGAATTCGCT TAACGGCATC AATAATGACT TCCCGGCGAA ACTTGCTCGC AGCTGTGAGA CGGCAACTCC CGACGATCGA CTGGTGCCCG CGGTACTGGC CGCCTGGGCG CAGGCCAACG TTGCGCGGGC GAATCTGGAC TATGCCAGCG CGCAAATGAC GCCGACAATT TCGCTCGAAC CTTCCGTTCA ACATTATCTT AATGATAAAT ATCCCAGTCA TGAAGTGCTG GATAAAACCC AGTATTCCAC CTGGGTGAAA GTTGAGATGC CGCTTTATCA GGGCGGAGGG CTGACTGCCC GACGCAACGC CGCCAGCCAT GCGGTAGACG CGGCTCAGTC GACCATTCAG CGCACCCGGC TTGATGTCCG CCAGAAACTG ATGGAGGCGC GCAGCCAGGC AATGAGTCTT GCCAGCGCGT TACAAATCCT TCGTCGGCAA CAGCAGCTTA GCGAACGCAC GCGCGAACTG TATCAGCAGC AATACCTTGA CCTCGGTTCC CGCCCGCTGC TCGACGTGCT TAATGCGGAG CAGGAAGTTT ACCAGGCGCG TTTTGCCGAA CTGCAAACGG AAAGCCAGTT GCATCAGTTG CAACTGAACT GTCTGTATAA CACCGGCGCG CTTCGTCAGG CGTTCGCGTT AAATCATCGC AGCATTCAAT CCGTGGAGAT CCAGCCATGA
|
Protein sequence | MGRVAPVAIV LAFALFHHQP RGAEAPPMIT SEGLATDQML PSLDGSAAEL PLSAAAPGNL TLNDAVNRAV SWHPSIREAV GKLLAQNEQI EVAKSKYYPQ VSAGVNNGYS NTYTDHGYSP SLVLSVSQML YDFGKVASQV RAETAGAAQQ QANVLLSIDT VAHETANAIV QTQSWQQMVE AAEEQLVALD SIGKLIRQRS DEGATSLSDV VQTEARIESA RSQLAQYQAN LGSAKASLMS WLGWNSLNGI NNDFPAKLAR SCETATPDDR LVPAVLAAWA QANVARANLD YASAQMTPTI SLEPSVQHYL NDKYPSHEVL DKTQYSTWVK VEMPLYQGGG LTARRNAASH AVDAAQSTIQ RTRLDVRQKL MEARSQAMSL ASALQILRRQ QQLSERTREL YQQQYLDLGS RPLLDVLNAE QEVYQARFAE LQTESQLHQL QLNCLYNTGA LRQAFALNHR SIQSVEIQP
|
| |