Gene SeSA_A2139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A2139 
SymbolfliR 
ID6517398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp2043518 
End bp2044312 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content51% 
IMG OID642747217 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_002115015 
Protein GI194736717 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.19844 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.226973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATACAGG TTACAAGCGA GCAATGGCTA TACTGGCTGC ATCTCTATTT CTGGCCTTTG 
CTGCGCGTAC TGGCGCTGAT TTCAACGGCG CCAATTCTCA GCGAGCGCGC TATTCCCAAG
CGGGTAAAAC TGGGGTTGGG AATAATGATT ACCCTTGTTA TCGCGCCGTC GCTACCGGCA
AACGATACGC CGCTTTTTTC TATTGCCGCC TTATGGCTGG CGATGCAACA AATTCTGATC
GGTATTGCGC TGGGATTTAC CATGCAATTC GCCTTTGCGG CGGTGCGTAC CGCAGGTGAG
TTTATCGGTC TGCAAATGGG GCTTTCCTTT GCCACCTTCG TCGACCCGGG CAGCCACCTG
AATATGCCGG TTCTGGCGCG TATTATGGAT ATGCTCGCCA TGCTACTGTT TCTCACCTTT
AATGGCCATT TGTGGCTTAT TTCGCTGCTG GTCGATACCT TCCATACTCT GCCCATCGGT
AGTAACCCGG TGAACAGTAA TGCATTTATG GCGCTCGCCA GGGCCGGAGG ACTCATTTTC
TTAAACGGAC TGATGCTGGC ATTGCCGGTC ATTACCCTCC TGCTTACGCT CAACCTGGCG
CTGGGGCTAT TAAACCGCAT GGCGCCGCAG CTCTCGATAT TTGTTATCGG TTTCCCGCTT
ACCCTCACCG TCGGCATTAT GCTGATGGCC GCGCTAATGC CATTAATTGC GCCGTTTTGC
GAACATTTAT TCAGCGAAAT TTTCAATTTG CTTGCTGATA TTGTTAGCGA GATGCCGATA
AATAATAACC CATAA
 
Protein sequence
MIQVTSEQWL YWLHLYFWPL LRVLALISTA PILSERAIPK RVKLGLGIMI TLVIAPSLPA 
NDTPLFSIAA LWLAMQQILI GIALGFTMQF AFAAVRTAGE FIGLQMGLSF ATFVDPGSHL
NMPVLARIMD MLAMLLFLTF NGHLWLISLL VDTFHTLPIG SNPVNSNAFM ALARAGGLIF
LNGLMLALPV ITLLLTLNLA LGLLNRMAPQ LSIFVIGFPL TLTVGIMLMA ALMPLIAPFC
EHLFSEIFNL LADIVSEMPI NNNP