Gene SeSA_A2127 details

Gene Information

• Locus tag: SeSA_A2127
• Symbol: fliF
• ID: 6519458
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
• Kingdom: Bacteria
• Replicon accession: NC_011094
• Strand: +
• Start bp: 2033643
• End bp: 2035382
• Gene Length: 1740 bp
• Protein Length: 579 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 642747205
• Product: flagellar MS-ring protein
• Protein accession: YP_002115003
• Protein GI: 194736346
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.152007
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 0.244786
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGTCTTG TTCCACTTTG CAAAAAACGC CGTCCACGAT CAGTCACGAG GTGCGAGATG 
AGTGCGACTG CATCGACTGC AACCCAACCT AAACCTCTCG AGTGGCTTAA TCGCCTACGC 
GCGAATCCCC GAATTCCGTT AATTGTAGCG GGTTCCGCTG CCGTGGCGAT CGTCGTTGCG 
ATGGTGCTGT GGGCCAAAAC GCCCGATTAC CGCACGCTAT TTAGCAACCT TTCCGATCAG 
GACGGCGGCG CGATCGTCGC GCAGTTGACC CAGATGAATA TCCCCTATCG CTTTGCCAAT 
GGCAGCGGCG CGATTGAAGT GCCCGCCGAC AAAGTGCATG AACTGCGTCT GCGTCTGGCG 
CAGCAGGGGC TGCCTAAAGG CGGCGCGGTA GGCTTTGAAC TGCTTGATCA GGAAAAATTC 
GGTATCAGTC AGTTCAGCGA GCAGGTGAAT TATCAGCGCG CGCTGGAAGG TGAACTGGCC 
CGGACGATCG AGACGCTGGG TCCGGTAAAA AGCGCCCGTG TTCACCTGGC GATGCCAAAG 
CCGTCGCTAT TTGTGCGGGA ACAAAAATCC CCTTCCGCCT CCGTCACCGT CACACTGGAA 
CCGGGACGGG CGCTGGATGA AGGACAAATT AGCGCCGTGG TACATCTGGT TTCCAGCGCT 
GTCGCCGGTT TGCCGCCAGG AAACGTCACT CTGGTCGATC AATCCGGTCA TCTGCTCACG 
CAATCCAATA CCAGCGGTCG CGACCTTAAT GACGCGCAAT TAAAATTTGC TAATGATGTG 
GAAAGCCGCA TCCAACGCCG TATCGAAGCC ATTCTGTCGC CTATCGTCGG GAACGGTAAT 
GTTCACGCTC AGGTAACCGC CCAGTTGGAT TTTGCCAATA AAGAACAGAC GGAAGAGCAC 
TACAGCCCGA ACGGCGATGC GTCGAAGGCC ACCCTGCGTT CACGTCAGTT GAATATTAGC 
GAACAGGTAG GCGCGGGCTA TCCCGGCGGC GTGCCTGGCG CGCTGTCGAA CCAACCAGCG 
CCGCCTAACG AGGCGCCGAT CGCCACGCCG CCGACCAATC AACAAAACGC GCAGAATACG 
CCACAAACCA GCACCAGTAC TAACAGTAAC AGCGCTGGCC CGCGCAATAC ACAGCGTAAT 
GAAACCAGTA ACTACGAAGT GGACCGCACC ATTCGTCACA CCAAAATGAA TGTGGGCGAT 
ATTGAGCGTC TCTCCGTGGC CGTCGTGGTG AATTACAAAA CGCTGGCGGA CGGCAAACCG 
CTGCCATTGA CCGCCGATCA GATGAAACAG ATCGAGGATT TAACCCGTGA AGCGATGGGT 
TTTTCTGATA AACGCGGCGA TACGCTAAAC GTGGTGAATT CACCGTTTAG CGCAGTGGAT 
AACACCGGCG GCGAACTGCC CTTCTGGCAA CAGCAGTCCT TTATCGATCA GTTGCTCGCG 
GCAGGTCGCT GGTTGCTGGT ACTGGTGGTG GCCTGGATTC TGTGGCGCAA AGCGGTACGT 
CCGCAGTTGA CGCGCCGTGT TGAAGAAGCG AAAGCGGCGC AGGAACAGGC GCAGGTTCGT 
CAGGAAACCG AAGAAGCCGT GGAAGTACGC CTTAGCAAAG ACGAGCAGCT CCAGCAACGC 
CGGGCTAACC AGCGTCTGGG CGCTGAGGTG ATGAGCCAGC GTATTCGCGA AATGTCAGAC 
AACGATCCGC GCGTGGTGGC GCTGGTCATT CGCCAGTGGA TGAGTAACGA TCATGAGTAA 

 

Protein sequence

MSLVPLCKKR RPRSVTRCEM SATASTATQP KPLEWLNRLR ANPRIPLIVA GSAAVAIVVA 
MVLWAKTPDY RTLFSNLSDQ DGGAIVAQLT QMNIPYRFAN GSGAIEVPAD KVHELRLRLA 
QQGLPKGGAV GFELLDQEKF GISQFSEQVN YQRALEGELA RTIETLGPVK SARVHLAMPK 
PSLFVREQKS PSASVTVTLE PGRALDEGQI SAVVHLVSSA VAGLPPGNVT LVDQSGHLLT 
QSNTSGRDLN DAQLKFANDV ESRIQRRIEA ILSPIVGNGN VHAQVTAQLD FANKEQTEEH 
YSPNGDASKA TLRSRQLNIS EQVGAGYPGG VPGALSNQPA PPNEAPIATP PTNQQNAQNT 
PQTSTSTNSN SAGPRNTQRN ETSNYEVDRT IRHTKMNVGD IERLSVAVVV NYKTLADGKP 
LPLTADQMKQ IEDLTREAMG FSDKRGDTLN VVNSPFSAVD NTGGELPFWQ QQSFIDQLLA 
AGRWLLVLVV AWILWRKAVR PQLTRRVEEA KAAQEQAQVR QETEEAVEVR LSKDEQLQQR 
RANQRLGAEV MSQRIREMSD NDPRVVALVI RQWMSNDHE