Gene SeSA_A2106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A2106 
Symbol 
ID6516616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp2017507 
End bp2018229 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content49% 
IMG OID642747185 
ProductDNA-binding transcriptional activator SdiA 
Protein accessionYP_002114983 
Protein GI194735895 
COG category[K] Transcription 
COG ID[COG2771] DNA-binding HTH domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.010871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAAA ATGATTTCTT CACCTGGCGA CGCGCAATGT TGTTACGCTT TCAGGAGATG 
GCGGCAGCAG AGGATGTTTA TACTGAATTG CAATATCAGA CACAGCGGCT GGAATTTGAT 
TATTATGCCC TGTGTGTTCG TCATCCCGTT CCCTTTACCC GGCCTAAAAT ATCGCTTCGT 
ACCACTTATC CTCCGGCGTG GGTAACGCAT TATCAGTCCG AAAACTATTT TGCGATCGAT 
CCGGTATTAA AGCCGGAAAA TTTCAGGCAG GGTCATTTAC ATTGGGATGA CATGCTATTT 
CATGAAGCGC AGGCGATGTG GGATGCCGCC CAGCGTTTCG GATTACGCAG AGGCGTAACC 
CAGTGTGTGA TGTTGCCGAA CCGGGCGCTG GGCTTTTTAT CTTTCTCCCG AAGCAGTTTA 
CGCTGCTCCT CGTTTACCTA CGATGAAGTG GAGCTGAGGT TGCAACTGCT GGCGCGGGAG 
AGTCTTTCGG CGCTGACAAG ATTTGAAGAC GACATGGTGA TGGCGCCTGA GATGCGTTTC 
AGTAAACGTG AGAAAGAGAT TCTGAAGTGG ACGGCGGAAG GGAAGACCTC ATCGGAGATC 
GCCATTATTC TGTCGATTTC TGAAAATACC GTTAACTTCC ATCAGAAAAA CATGCAGAAG 
AAATTCAATG CGCCAAATAA AACACAGATT GCCTGCTACG CTGCGGCGAC AGGTCTGATA 
TGA
 
Protein sequence
MQENDFFTWR RAMLLRFQEM AAAEDVYTEL QYQTQRLEFD YYALCVRHPV PFTRPKISLR 
TTYPPAWVTH YQSENYFAID PVLKPENFRQ GHLHWDDMLF HEAQAMWDAA QRFGLRRGVT 
QCVMLPNRAL GFLSFSRSSL RCSSFTYDEV ELRLQLLARE SLSALTRFED DMVMAPEMRF 
SKREKEILKW TAEGKTSSEI AIILSISENT VNFHQKNMQK KFNAPNKTQI ACYAAATGLI