Gene SeSA_A1971 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1971 
Symbol 
ID6517926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp1902890 
End bp1904491 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content54% 
IMG OID642747061 
Productcyclic diguanylate phosphodiesterase (EAL) domain protein 
Protein accessionYP_002114862 
Protein GI194737036 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACAG CACAACGGAT CATCAATCAT TATCGCCGTA ATCGTTTCAT TGTTTGCACG 
ATTTGTGCAC TGGTCACGCT CATTCTTACG CTGAGCATCC GATTTATTTC GGAGCGGAAC 
TTAAATCACC ATCGCACGGT TGCATTCGCG AATCATGCCG TTGATGCGCT GGATAATGTG 
CTGCATCCTC TCCTGGTCGG ACGAAACATA CTGCTACCCT TACTTGAGCT TCCGTGCGCG 
ACCGCGCATT TGCCGTTGCG TAAGCAAGCC GCCCGCCTGC AAACCATTCG TTCTATCGGG 
CTGGTAAAAG AGGGAATTCT CTACTGCTCA AGCATTTTTG GCGCCCGTAA CACTCCCATA 
CGCCAGCTTC AGCCCGATCT TCCCGCAGCT GGCGATCTGC TGCTACTTTC CACGGACCAA 
TCGTTACTCA AGGGAAGCCC GATCCTCATT CAGTGGTATC CCGCCTCTGC CGATGGCCAG 
GATGGCGTGA TGGAAATTGT GAATATTGAC TTGCTGGCGA CTATGCTACT TGAGCCGCAG 
CAGCCGCAAA TTACCAGCGC CAGCCTGACG GTCGGCAAAC GGCACCTGTT ATATGGTCGG 
GGCGTGGTCG ATACTCTTCC GGAATTAAAA AAAGATGAAG AGCGTTACCA GCTTTCATCG 
CGGCATTTCC CTTTTACTAT CAGCGTCAGC GGGCCGTCGG CAGGCGTACT GGCGTTCAAA 
CATCTCCCGA CGCAGTTACC GCTGGCCGTA TTGCTTAGCC TGTTGATCGG TTATATCGCC 
TGGCTGGCAA CGGCCAGCAG AATGAGCTTT TCCTGGGAGA TTAATCTGGC CCTTGCCGAA 
CGGGAGTTTG AGCTATTTTG TCAGCCGTTG CTTAATGCCC GCACGCAGCA GTGTACCGGC 
GTTGAGATCC TGTTACGCTG GAATAACCCG CGCCAGGGCT GGATCTCACC GGATGTTTTT 
ATTCCTATCG CCGAGGAGCA TAACCTGATA GCGCCGCTGA CCCGCTATGT GATTGCGGAA 
ACCATTCGGC AGCGGCACTA CTTCCCCATC AACCATCAGT TTCATATCGG CATCAATGTG 
GCGGCAAGCC ATTTCCGACA CGGCGTGCTT CTCAAGGATC TTAATCAGTA CTGGTTTAGT 
GCGGAACCTG TTCAGCAACT GGTGCTGGAG CTCACGGAAC GCGACGCGTT GCTTGACGTT 
GATTACCGCC TGATGCGCGA ACTGCATCGT AAAGGCGTGA AGTTAGCCAT CGATGATTTT 
GGCACAGGAA ACAGCTCGCT CTCCTGGCTG GAAAAACTGC GGCCGGATAT TTTGAAAATC 
GATAAATCCT TCACCGCGGC CATCGGTACC GATGCGGTCA ATTCAACGGT GACCGATATT 
ATTATCGCGC TAGGGCAGAG ACTGAATATT GAACTGGTGG CGGAAGGGGT CGAAAACCAG 
ACGCAGGCAC AGCATTTGCG CCAGCATGGC GTGCAAATGT TACAGGGCTA TCTCTATGCG 
AAGCCGATGC CCATTAGCGA ATTTCCACAG TGGCTGGCGG GCAGCGCGCC GCCGCCCGCC 
CGGCATAACG GACAGATTAT GTCCGCGATG CCGCATCTAT AG
 
Protein sequence
MQTAQRIINH YRRNRFIVCT ICALVTLILT LSIRFISERN LNHHRTVAFA NHAVDALDNV 
LHPLLVGRNI LLPLLELPCA TAHLPLRKQA ARLQTIRSIG LVKEGILYCS SIFGARNTPI 
RQLQPDLPAA GDLLLLSTDQ SLLKGSPILI QWYPASADGQ DGVMEIVNID LLATMLLEPQ 
QPQITSASLT VGKRHLLYGR GVVDTLPELK KDEERYQLSS RHFPFTISVS GPSAGVLAFK 
HLPTQLPLAV LLSLLIGYIA WLATASRMSF SWEINLALAE REFELFCQPL LNARTQQCTG 
VEILLRWNNP RQGWISPDVF IPIAEEHNLI APLTRYVIAE TIRQRHYFPI NHQFHIGINV 
AASHFRHGVL LKDLNQYWFS AEPVQQLVLE LTERDALLDV DYRLMRELHR KGVKLAIDDF 
GTGNSSLSWL EKLRPDILKI DKSFTAAIGT DAVNSTVTDI IIALGQRLNI ELVAEGVENQ 
TQAQHLRQHG VQMLQGYLYA KPMPISEFPQ WLAGSAPPPA RHNGQIMSAM PHL