| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1705 |
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| Symbol | |
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| ID | 6517217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | + |
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| Start bp | 1644656 |
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| End bp | 1646776 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642746809 |
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| Product | probable TonB-dependent receptor yncD |
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| Protein accession | YP_002114612 |
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| Protein GI | 194735947 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.714131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.179613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATTA TTTCCGTTAG ACAGCGACTT TATCCCGCCC TCTTATTGCC TCTGACCTTC
TCCCCGGTCC TTCAGGCCGC CAGCGCGCCC AATGAACAAA CCATGATAGT CACCGCAACG
CCGCAAACCG TATCCGAACT GGATACACCT GCCGCCGTTA GCGTCATTGA GGGAGAAGAC
ATGCGTCTGG CGACGCCGCG CGTCAATTTA TCTGAGTCTT TAACCAGCGT CCCGGGATTG
CAGGTGCAAA ACCGGCAGAA CTACGCGCAG GATCTGCAAA TCTCTATCCG CGGATTTGGC
TCGCGTTCCG CCTTTGGCGT GCGCGGCATT CGTCTGTATG TTGATGGCAT TCCCGCCACC
ATGCCGGATG GGCAAGGCCA GATTTCGAAT ATTGATATTA ACAGCATACA AGACGTTGAA
GTGTTACGCG GCCCTTTCTC AGCGCTATAC GGCAATGCTT CCGGCGGCGT GATAAATGTC
ACCACCGAAA CCGGCAAACA GCCGCCTACC CTTGAGGCCA GCAGCTACTA CGGCAGTTAT
GGAAGCTGGC GCTATGGGCT AAAAGCCACG GGCGCGATGG GTGACGGCAC ACAGCCAGGC
GACGTGGATT ACACGGTATC GACTACCCGT TTCACCACCC ACGGCTACCG CGATCACAGC
GGTGCGCGAA AAAATCTGGC TAATGCCAAA CTGGGCGTTC GCCTTGACGA TGTCAGTAAA
CTCTCGCTGA TTTTTAATAG TGTGGACATT AAGGCGGACG ATCCCGGCGG ACTTACCGAA
TCTGAATGGA AAGCCGATCC GCAACAGGCG CCGCGCGCTG AACAGTACAA TACGCGTAAA
ACCATCAAAC AAACTCAGGC AGGATTGCGT TATGAACGTC AGCTCAGCGC GCAGGATGAT
ATCAGCGTGA TGGCCTACGC CGGAGAGCGG GAAACCACGC AATACCAGTC TATTCCCCTG
GTGGCACAGC TAAAACCAGC TCAGGCTGGC GGCGTAATTA CACTGCAACG CCACTATCAG
GGCATTGATT CCCGCTGGAC TCACCGGGGA GAATTAGGTG TGCCGGTCAC CTTCACTGGC
GGAGTAAACT ATGAAAACAT GAGCGAAAAC CGCAAGGGTT ACAATAACTT CCGTCTCAAC
AACGGCACCC CTGAGTTTGG GCATAAAGGC GATTTACGCC GGGATGAGCG TAACCTGATG
TGGAATGTCG ATCCTTATCT GCAAACCCAG TGGCAGCTTA CGCAAAAACT CTCGCTGGAT
GCTGGCGTGC GCTACAGTTC CGTGTGGTTC GATTCTAACG ATCACTATAT CGCGCCCGGC
AATGGCGATG ACAGCGGCGA CGCCAGCTAT CACCACTGGC TACCCGCCGG ATCGCTAAAA
TATGCGTTAA CTGACGCCTG GAATCTCTAT CTTGCTGCCG GTCGCGGATT TGAAACTCCC
ACAATCAATG AGCTTTCTTA TCGCGCTGAC GGCCAAAGTG GGTTCAACTT TGACCTCAAA
CCGTCGACCA ATGATACGGT GGAAGTCGGC AGTAAAACGC GGATTGGCAA TGGCTTGTTG
ACCGCCGCGT TATTTCAAAC CGATACCGAT GATGAAATTG TCGTCGCCAG CAGTATGGGA
GGACGCACTA CCTACAAAAA CGCGGGCAAA ACACGCCGCC AGGGCGCAGA ACTCTCGTTG
GACCAGCGCT TCGCCGGCGA CTGGCGGGTG AAAGCATCAT GGACCTGGCT GGATGCGACC
TATCGCAGTA ACGTTTGTCA GGGGCAAAAC TGTGATGGAA ACCGGATGCC CGGCATCGCC
CGTAATATGG GATTCGCCTC ATTAGGTTTT ATCCCGGATG AGGGGTGGTA CGCCGGAACA
GACGTTCGCT ATATGGGCGA TATCATGGCC AATGATGAAA ATACCGCCAA AGCGCCTTCG
TATACCGTTG TTGGACTAAA TACAGGGTAT AAATTTAATT ACAGTCAGCT TACCGTCGAT
ATTTTTGGGC GGGTAGATAA TCTATTTGAT AAAGAATATA TCGGTTCAGT GATCGTTAAT
GAATCTAATG GCCGATATTA TGAGCCAGCG CCAGGGCGTA ACTATGGCGT GGGGATTAAT
CTGGCATGGC AATTTGAATA A
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| Protein sequence | MKIISVRQRL YPALLLPLTF SPVLQAASAP NEQTMIVTAT PQTVSELDTP AAVSVIEGED
MRLATPRVNL SESLTSVPGL QVQNRQNYAQ DLQISIRGFG SRSAFGVRGI RLYVDGIPAT
MPDGQGQISN IDINSIQDVE VLRGPFSALY GNASGGVINV TTETGKQPPT LEASSYYGSY
GSWRYGLKAT GAMGDGTQPG DVDYTVSTTR FTTHGYRDHS GARKNLANAK LGVRLDDVSK
LSLIFNSVDI KADDPGGLTE SEWKADPQQA PRAEQYNTRK TIKQTQAGLR YERQLSAQDD
ISVMAYAGER ETTQYQSIPL VAQLKPAQAG GVITLQRHYQ GIDSRWTHRG ELGVPVTFTG
GVNYENMSEN RKGYNNFRLN NGTPEFGHKG DLRRDERNLM WNVDPYLQTQ WQLTQKLSLD
AGVRYSSVWF DSNDHYIAPG NGDDSGDASY HHWLPAGSLK YALTDAWNLY LAAGRGFETP
TINELSYRAD GQSGFNFDLK PSTNDTVEVG SKTRIGNGLL TAALFQTDTD DEIVVASSMG
GRTTYKNAGK TRRQGAELSL DQRFAGDWRV KASWTWLDAT YRSNVCQGQN CDGNRMPGIA
RNMGFASLGF IPDEGWYAGT DVRYMGDIMA NDENTAKAPS YTVVGLNTGY KFNYSQLTVD
IFGRVDNLFD KEYIGSVIVN ESNGRYYEPA PGRNYGVGIN LAWQFE
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