| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1670 |
|---|
| Symbol | glgX |
|---|
| ID | 6518212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 1604606 |
|---|
| End bp | 1606666 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642746778 |
|---|
| Product | glycogen debranching enzyme GlgX |
|---|
| Protein accession | YP_002114581 |
|---|
| Protein GI | 194735910 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00650022 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA ACAGGGCTTT TGAAATCAGA TCAGGATACA GCCATACGCT TGGCGCGAAT
TATGACGGCG AAGGCGTGAA TTTCGCTATT TTTTCCGCCC ATGCGGAACG CGTCGATCCG
AGCGGGGAGC ATGAAATCGC TCGTCTGGAG TTACCGGAGT ATACCGACGA AATATGGCAC
GGCTGTGTCC CGAAGTTGCA GCCCGGCGCG CTGTATGGGT ACCGTGTTTA CGGTCCTTAT
GACCCGGAAA ATGGTCATCG TTTTAACCCC AATAAGCTGC TTATTGACCC TTATGCCCGT
GAGCTGGTGG GCGATATTCA GTGGAACGAT GCGCATTTCG CGTATCAATT ACTTCATGAC
GATAAAGATT TGACCTTTGA TGACCAGGAT AGCGCGCCAT TTACGCCTAA ATGCCGGGTG
ATTGATCCGG CTGAGGCGAA TTGGGAGGAT AGACAACGGC CTTCCATACC GTGGTCGAAC
GCCATTATTT ATGAAACGCA TGTAAAAGGC TTTACCCAGC TTAATTCCGC GATCCCTGAG
CCTATACGCG GTACGTTTGA GGGCATGGGG CATAAAGCCA GCGTGGATTA CATTAAAAGT
CTGGGGATTA CCTCCGTCGA GCTTTTACCC GTTCACTGGT TCCCGGACGA TCAGCATCTG
CTCGATAAAG GACTGAAAAA TTTCTGGGGA TACAACTCGC TGGGCTTTTT TGCGCCGGCG
ACGCGCTACT ATGGTCCAAA AGGTATTCAG GGATTCCGCG ATATGGTGCG CGCTTTCCAT
GATGCCGGCA TCGAAGTGAT ACTGGATGTG GTCTATAACC ATACGGCAGA AGGGAATGAG
CTTGGTCCCA CGCTGTCATT TAAAGGTATC GATAACTTCT CTTACTATCG CACCATGCCC
GATCAGCATC GCTATTACAT TAACGATACA GGGACAGGTA ATACCGTCAA TACCTCTCAT
CCACGGGTAC TGCAAATGGT GATGGATTCG CTTCGCTATT GGGCGGAGTC AATGCATGTC
GACGGCTTTC GTTTTGATTT GGGCACCATT CTTGGTCGTG AGCCGGAAGG CTTTGATCAG
AGAGGCGGCT TTTTTGATGC GGTAACGCAA GACCCGGTAC TGGCAAAACT GAAACTGATT
GGCGAACCCT GGGATATCGG ACCGGGCGGC TATCAGGTTG GCGGTTTTCC ACCAGGGTGG
GGCGAATGGA ATGATAAATA CCGCGATACG GTGCGCGAAT ACTGGAAAGG TGACAACGTC
ACAAATGATT TCGCTGCACG CCTGCTGGGT TCCGGCGATC TCTATGATTT GCGCGGCCGT
CGCCCCTGGT CAAGCGTTAA CTTTATTACT GCCCATGACG GCTTCACGCT GAACGATCTG
GTGTCTTATA ACGACAAACA TAATGAAGCC AATGGCGAAG ATAATAATGA CGGGCATAAT
GATAACCGCT CCTGTAACTA TGGCGCAGAA GGGCCAACCG ACGACGAGGG CATCAATGCG
ATACGCGAGC AACAGAAACG TAATTTCCTG ACCACCTTGC TTTTCTCGCA CGGCACGCCG
ATGTTATTAG CGGGCGATGA GTTTGGCCGC AGTCAGATGG GCAATAACAA TGGCTACTGT
CAGGACAGTG AAATATCGTG GGTCCACTGG GATAATTTGC CGGAAACCGC CAATGCGCTA
CGGGAGTTTA CCCGTCATCT GATTCAACTG CGCGCCACGC AACCGTTGCT GCGCCGGGAG
AGCTGGCGTG ACGGTCTGGA GATCCGCTGG TTTAACGCCG GCGGAGGGGC GCAGCAATCC
GAACAATGGG ATGAGGGATC GACGATAGGC GTATGTATTA GTCGACCCGA TCTTCAGCCG
GAAGCGGGGA TCTGGCACGA CGCCTTACTG CTTTTCAATC CGTTTGAAGG CAGCGTACCG
TTCCGTATTC CGATGTGGGG AGAAGGCGGC TGGGTACTTG AACTGACGAC TGCCGATAAC
GCGCAGCAGG GAATGCGGAT TACCGAAGAA ATGGATTTCG ATCTGGCCGG GCGCAGCATC
GTGTTATTCA GACGCCCCTG A
|
|---|
| Protein sequence | MTTNRAFEIR SGYSHTLGAN YDGEGVNFAI FSAHAERVDP SGEHEIARLE LPEYTDEIWH
GCVPKLQPGA LYGYRVYGPY DPENGHRFNP NKLLIDPYAR ELVGDIQWND AHFAYQLLHD
DKDLTFDDQD SAPFTPKCRV IDPAEANWED RQRPSIPWSN AIIYETHVKG FTQLNSAIPE
PIRGTFEGMG HKASVDYIKS LGITSVELLP VHWFPDDQHL LDKGLKNFWG YNSLGFFAPA
TRYYGPKGIQ GFRDMVRAFH DAGIEVILDV VYNHTAEGNE LGPTLSFKGI DNFSYYRTMP
DQHRYYINDT GTGNTVNTSH PRVLQMVMDS LRYWAESMHV DGFRFDLGTI LGREPEGFDQ
RGGFFDAVTQ DPVLAKLKLI GEPWDIGPGG YQVGGFPPGW GEWNDKYRDT VREYWKGDNV
TNDFAARLLG SGDLYDLRGR RPWSSVNFIT AHDGFTLNDL VSYNDKHNEA NGEDNNDGHN
DNRSCNYGAE GPTDDEGINA IREQQKRNFL TTLLFSHGTP MLLAGDEFGR SQMGNNNGYC
QDSEISWVHW DNLPETANAL REFTRHLIQL RATQPLLRRE SWRDGLEIRW FNAGGGAQQS
EQWDEGSTIG VCISRPDLQP EAGIWHDALL LFNPFEGSVP FRIPMWGEGG WVLELTTADN
AQQGMRITEE MDFDLAGRSI VLFRRP
|
|---|
| |