| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1294 |
|---|
| Symbol | lolC |
|---|
| ID | 6517005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 1267324 |
|---|
| End bp | 1268523 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642746415 |
|---|
| Product | outer membrane-specific lipoprotein transporter subunit LolC |
|---|
| Protein accession | YP_002114223 |
|---|
| Protein GI | 194734536 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00760264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAAC CTGTCGCTCT ATTCATTGGC CTGCGTTACA TGCGCGGGCG TGCAGCAGAT
CGCTTCGGTC GCTTCGTTTC CTGGCTTTCC ACTATCGGCA TTACCCTGGG GGTGATGGCG
CTGGTCACGG TATTGTCGGT GATGAACGGT TTTGAGCGCG AACTGCAAAA TAACATTCTT
GGTTTGATGC CTCAGGCCAT CCTCTCTGCT GAACATGGTT CTCTTAACCC GAATCAGATG
CCGGAAAAAG CGGTGAATCT GCAAGGCGTT AACCGTATTG CGCCGCTGAC GACGGGCGAT
GTCGTACTGC AAAGCGCGCG TAGCGTTGCG GTTGGCGTGA TGTTGGGTAT CGATCCGGCG
CAAAAAGATC CGTTAACGCC GTATCTGGTC AATGTGAAGC AAAGCGAATT ACAGCCGGGT
AAGTATAATG TCATCCTCGG CGAGCAGCTC GCCGGACAGT TAGGGGTCAA CCGCGGCGAT
CAGATTCGGC TAATGGTGCC ATCTGCCAGC CAGTTTACGC CAATGGGACG TCTGCCCAGC
CAGCGTCTGT TTACGGTGAT TGGCACATTT GCCGCCAATA GCGAGGTCGA TGGCTATGAA
ATGCTGGTCA ATATTCAGGA CGCATCGCGT TTAATGCGCT ATCCGGCAGG CAATATTACC
GGCTGGCGTC TGTGGCTGGA TGAACCGCTG CAAGTCGATA CCCTCAGCCA ACAGACGCTG
CCGCAAGGCA CGAAGTGGCA GGACTGGCGC GAACGTAAAG GCGAGTTGTT CCAGGCTGTG
CGCATGGAAA AGAACATGAT GGGATTGTTG CTGAGCCTCA TCGTGGCGGT CGCGGCTTTT
AACATTATTA CTTCGTTGGG TCTGATGGTC ATGGAGAAGC AGGGCGAAGT GGCGATTTTA
CAAACTCAAG GGCTGACGCC GCGACAAATT ATGATGGTCT TTATGGTGCA GGGTGCCAGC
GCCGGGATTA TCGGCGCGCT GTTGGGCGCC GCGCTGGGCG CATTGCTTGC CAGCCAACTG
AATAACCTGA TGCCGATCAT CGGCGCGTTT CTGGATGGCG CTGCGTTGCC CGTGGCGATA
GAGCCGTTAC AGGTGATCGT TATCGCTCTG GTGGCAATGG CCATCGCGCT GCTTTCTACG
CTTTATCCTT CCTGGCGCGC TGCCGCCACT CAACCCGCTG AGGCTTTACG TTATGAATAA
|
|---|
| Protein sequence | MYQPVALFIG LRYMRGRAAD RFGRFVSWLS TIGITLGVMA LVTVLSVMNG FERELQNNIL
GLMPQAILSA EHGSLNPNQM PEKAVNLQGV NRIAPLTTGD VVLQSARSVA VGVMLGIDPA
QKDPLTPYLV NVKQSELQPG KYNVILGEQL AGQLGVNRGD QIRLMVPSAS QFTPMGRLPS
QRLFTVIGTF AANSEVDGYE MLVNIQDASR LMRYPAGNIT GWRLWLDEPL QVDTLSQQTL
PQGTKWQDWR ERKGELFQAV RMEKNMMGLL LSLIVAVAAF NIITSLGLMV MEKQGEVAIL
QTQGLTPRQI MMVFMVQGAS AGIIGALLGA ALGALLASQL NNLMPIIGAF LDGAALPVAI
EPLQVIVIAL VAMAIALLST LYPSWRAAAT QPAEALRYE
|
|---|
| |