| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1292 |
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| Symbol | mfd |
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| ID | 6515706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | - |
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| Start bp | 1263540 |
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| End bp | 1266986 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642746413 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002114221 |
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| Protein GI | 194738344 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.208562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAAA AACAACGTTA CACGCTGCCG ACAAAAGCGG GCGATCAGCG CCAGTTGGGC
GAACTTACCG GCGCCGCCTG CGCTACGCTG GTGGCGGAGA TAGCCGAACG CCATGCCGGT
CCGGTGGTAC TCATAGCGCC TGACATGCAA AATGCTCTGC GATTGCATGA TGAAATCCGC
CAGTTTACCG ATCAGATGGT CATGAACCTG GCGGACTGGG AAACGCTACC GTATGACAGC
TTCTCCCCGC ATCAGGAAAT TATCTCTTCG CGCCTGTCCA CACTCTACCA GTTGCCGTCG
ATGCAGCGCG GCGTCTTGAT TGTACCGGTA AACACCCTGA TGCAGCGCGT TTGTCCGCAT
AGCTATCTGC ATGGTCATGC GCTGGTGATG AAAAAAGGCC AGCGGCTGTC CCGCGACGCT
CTGCGCGCGC AGCTTGACAG CGCCGGTTAT CGGCATGTCG ATCAGGTGAT GGAGCATGGC
GAATACGCGA CGCGCGGCGC ACTGTTGGAT CTCTTTCCGA TGGGCAGCGA ACAGCCTTAT
CGCCTCGACT TTTTTGATGA TGAAATCGAC AGCCTGCGTC TGTTTGACGC GGATACCCAG
CGTACGCTGG AGGAGGTCGA GGCCATCAAT TTGTTGCCCG CGCACGAATT TCCTACCGAC
AAAGCCGCTA TTGAGCTTTT CCGTAGCCAG TGGCGCGATA CCTTTGAGGT AAAACGCGAC
GCCGAGCACA TCTATCAGCA GGTCAGCAAA GGCACCCTGC CCGCCGGGAT CGAATACTGG
CAGCCGCTCT TTTTCAGCGA ACCGTTACCG CCATTATTTA GCTACTTCCC CGCCAATACT
CTGGTGGTGA ATACCGGCTC GCTGGAAACC AGCGCCGAAC GCTTTCAGGC CGATACGCTG
GCGCGTTTTG AAAATCGCGG CGTCGATCCT ATGCGCCCAC TTTTGCCGCC GGAAGCCCTC
TGGCTACGGG TAGATGAGCT CTTTTCCGAG CTTAAACGCT GGCCTCGCCT CCAGCTTAAA
ACCGACCATC TGCCGGAAAA AGCCGCCAAT ACCAATCTCG GTTTCCAGAA ATTACCGGAT
TTGGCTATCC AGGCACAGCA GAAAGCGCCG CTGGACGCGC TGCGTAAGTT CCTCGAATCT
TTCAGCGGCC CGGTGATTTT TTCGGTGGAA AGCGAAGGAC GCCGCGAAGC GCTGGGAGAG
CTCCTGGCTC GCATAAAAAT CGCGCCGAAG CGGATATTAC GCCTGGACGA GGCGCAGGAT
GCGGGGCGCT ATCTGATGAT TGGCGCCGCA GAACATGGTT TTATTGACAC CCAACGCAAT
CTGGCTCTGA TTTGTGAAAG CGATCTCCTG GGTGAGCGGG TTGCACGTCG CCGCCTGGAT
TCCCGTCGTA CGATCAACCC GGATACGTTG ATTCGTAACC TGGCGGAGCT CCACGTCGGT
CAACCGGTAG TGCATCTGGA GCACGGCGTC GGGCGTTATG CCGGCATGAC CACGCTGGAG
GCTGGCGGCA TCAAGGGTGA GTATCTGATG CTCACTTACG CCAATGACGC CAAACTGTAT
GTGCCGGTCT CCTCGTTGCA TCTGATTAGC CGCTATGCTG GCGGCGCGGA AGAAAGTGCG
CCGCTGCATA AACTGGGCGG CGACGCCTGG TCGCGCGCCC GGCAGAAAGC GGCGGAAAAA
GTGCGCGATG TCGCAGCGGA ACTGTTGGAT ATTTATGCGC AACGGGCGGC AAAAGAGGGT
TTTGCCTTTA AGCATGATCG TGAGCAATAT CAGTTATTCT GCGACAGCTT CCCGTTTGAA
ACGACGCCCG ATCAAGCACA GGCGATTAAC GCCGTATTGA GCGATATGTG CCAACCGCTG
GCGATGGACA GGCTGGTGTG CGGCGACGTC GGCTTCGGCA AAACCGAAGT GGCGATGCGC
GCCGCGTTCC TGGCGGTGGA AAACCATAAA CAGGTGGCGG TACTGGTGCC GACTACGCTG
CTGGCGCAGC AACACTATGA CAACTTCCGC GACCGTTTCG CCAACTGGCC GGTACGCATT
GAGATGCTGT CCCGCTTTCG CAGCGCCAAA GAGCAGACGC AAATCCTGGC GGAAGCCGCC
GAGGGTAAGA TCGATATTCT GATCGGTACG CATAAACTGC TACAAAGCGA TGTGAAGCTG
CGCGACCTCG GCCTGCTGAT TGTCGATGAA GAGCACCGTT TCGGCGTGCG CCACAAAGAG
CGAATCAAGG CGATGCGCGC CGATGTCGAT ATTCTGACGC TCACGGCGAC GCCGATCCCG
CGGACGCTGA ATATGGCGAT GAGCGGTATG CGCGATCTCT CCATTATCGC CACCCCCCCT
GCCCGTCGTC TGGCGGTAAA AACCTTTGTC CGCGAGTATG ATAGCCTGGT AGTAAGGGAA
GCGATTCTGC GTGAAATCCT GCGCGGCGGT CAGGTTTACT ATTTGTACAA TGACGTCGAA
AATATTCAGA AAGCCGCAGA GCGGCTGGCG GAACTGGTGC CGGAAGCGCG AATCGCTATA
GGCCACGGGC AGATGCGCGA ACGTGAGCTG GAACGGGTCA TGAACGATTT CCACCATCAA
CGTTTTAACG TGCTGGTGTG TACTACCATT ATCGAAACGG GGATCGACAT TCCCACCGCT
AACACGATCA TCATTGAACG CGCGGATCAT TTCGGCCTCG CGCAGTTGCA CCAGTTGCGT
GGCCGCGTAG GGCGCTCGCA CCACCAGGCC TACGCCTGGC TATTGACGCC ACATCCTAAG
GCCATGACCA CCGATGCGCA AAAACGGCTG GAGGCGATTG CGTCGCTGGA GGATTTAGGC
GCCGGGTTTG CGCTGGCGAC CCACGATCTG GAGATCCGCG GCGCAGGCGA ACTGCTTGGC
GAAGAGCAAA GCGGCTCAAT GGAAACCATC GGCTTCTCAC TCTACATGGA ACTGCTGGAA
AACGCCGTCG ATGCGCTGAA AGCAGGCCGC GAACCCTCGC TGGAAGATCT CACCAGTCAG
CAAACGGAAG TCGAGCTGCG AATGCCGTCG TTACTGCCGG ATGATTTTAT TCCGGATGTT
AATACCCGGC TGTCATTCTA TAAACGCATT GCCAGCGCGA AGAACGAAAA CGAGCTGGAA
GAGATCAAAG TGGAATTGAT CGATCGCTTC GGCCTGCTGC CCGATCCAGC GCGTAATCTG
CTGGATATCG CCCACCTTCG CCAACAGGCG CAAAAGCTCG GCATCCGAAA ACTGGAGGGT
AACGAGAAAG GCGGAACGAT TGAGTTCGCC GAGAAAAACC ACGTTGACCC TGCCTGGCTT
ATCGGGTTGC TGCAAAAACA ACCGCAGCAT TTCCGTCTGG ATGGCCCGAC GCGCCTCAAG
TTTATTCAGG ATTTAAGCGA ACGTAAAACG CGTATAGACT GGGTACGCCA GTTCATGCAG
CAACTGGAAG AAAACGCTAT TGCATAA
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| Protein sequence | MPEKQRYTLP TKAGDQRQLG ELTGAACATL VAEIAERHAG PVVLIAPDMQ NALRLHDEIR
QFTDQMVMNL ADWETLPYDS FSPHQEIISS RLSTLYQLPS MQRGVLIVPV NTLMQRVCPH
SYLHGHALVM KKGQRLSRDA LRAQLDSAGY RHVDQVMEHG EYATRGALLD LFPMGSEQPY
RLDFFDDEID SLRLFDADTQ RTLEEVEAIN LLPAHEFPTD KAAIELFRSQ WRDTFEVKRD
AEHIYQQVSK GTLPAGIEYW QPLFFSEPLP PLFSYFPANT LVVNTGSLET SAERFQADTL
ARFENRGVDP MRPLLPPEAL WLRVDELFSE LKRWPRLQLK TDHLPEKAAN TNLGFQKLPD
LAIQAQQKAP LDALRKFLES FSGPVIFSVE SEGRREALGE LLARIKIAPK RILRLDEAQD
AGRYLMIGAA EHGFIDTQRN LALICESDLL GERVARRRLD SRRTINPDTL IRNLAELHVG
QPVVHLEHGV GRYAGMTTLE AGGIKGEYLM LTYANDAKLY VPVSSLHLIS RYAGGAEESA
PLHKLGGDAW SRARQKAAEK VRDVAAELLD IYAQRAAKEG FAFKHDREQY QLFCDSFPFE
TTPDQAQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVENHK QVAVLVPTTL
LAQQHYDNFR DRFANWPVRI EMLSRFRSAK EQTQILAEAA EGKIDILIGT HKLLQSDVKL
RDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVVRE AILREILRGG QVYYLYNDVE NIQKAAERLA ELVPEARIAI
GHGQMREREL ERVMNDFHHQ RFNVLVCTTI IETGIDIPTA NTIIIERADH FGLAQLHQLR
GRVGRSHHQA YAWLLTPHPK AMTTDAQKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EEQSGSMETI GFSLYMELLE NAVDALKAGR EPSLEDLTSQ QTEVELRMPS LLPDDFIPDV
NTRLSFYKRI ASAKNENELE EIKVELIDRF GLLPDPARNL LDIAHLRQQA QKLGIRKLEG
NEKGGTIEFA EKNHVDPAWL IGLLQKQPQH FRLDGPTRLK FIQDLSERKT RIDWVRQFMQ
QLEENAIA
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