| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1253 |
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| Symbol | rne |
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| ID | 6518204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | - |
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| Start bp | 1226659 |
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| End bp | 1229862 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642746376 |
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| Product | ribonuclease E |
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| Protein accession | YP_002114184 |
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| Protein GI | 194737331 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.16743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT
GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC
ATCTACAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC
GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT
AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC
ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC
AGTCTGGCGG GCAGCTACCT GGTGCTGATG CCGAATAACC CGCGCGCGGG TGGTATTTCC
CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGCTGGCCAG CCTGGAACTT
CCTGAAGGAA TGGGGCTTAT CGTGCGTACC GCAGGCGTGG GTAAATCCGC CGAAGCGTTG
CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAAGCCA TTCAGAAAGC CGCTGAAAGC
CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC
TATTTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CCAAAGTGAT GGAAATGGCG
CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC
GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG
CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC
GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACGGCGTTT
AATACCAACC TGGAAGCGGC CGATGAGATT GCCCGCCAGT TGCGTCTGCG CGACCTGGGC
GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTAC GTCACCAGCG CGCGGTAGAA
AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC
CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCGCTGGG CGAATCCAGT
CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG
CTGTCCATTC TGCGCCTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT
GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTTAAC
GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATCG TCCCGAACGA TCAGATGGAA
ACGCCGCACT ATTCCGTGCT GCGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC
ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG
CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCGGCG
CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC
GCGCAGCCTG CCCAGCCAGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC
AGCGGTGAAG AAACGAAAGC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG
CGTCAGCAGG ATCGTCGCAA GCCACGGCAG AACAACCGTC GCGATCGTAA CGAACGCCGC
GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT
AACCGTCGCC AGGCGCAGCA GCAAAATGCG GAAGCGCGCG ATACCCGCCA GCAGGAAACG
GCGGAAAAAG TGAAAACCGG CGATGAGCAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC
CGCCGCAATG ATGACAAACG CCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA
CTGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG
CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAT
ACGCCAGTCG TCGTCGACGA ACCACGCCCG GTTGAAAACG TTGAACAGCC CGTTCCAGCG
CCGCGTACCG AATTGGCGAA AGTTGATTTA CCTGTCATTG CCGATATCGC GCCGGAGCAG
GATGATAGCG TAGAACCTCG CGATAATACT GGTATGCCGC GTCGCTCCCG CCGTTCTCCG
CGCCACCTGC GCGTTAGCGG TCAGCGTCGT CGTCGCTATC GTGACGAGCG CTACCCGACA
CAATCGCCGA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCGTC CGGTAAAGTC
TGGATCCGCT ACCCGATTGT CCGTCCTCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA
GCAGATCTGG CGCTGCCACA ACCGGTTGTC GCTGAACCGC AGGTTATCGC TGCGACCGTA
GCGTTAGAAC CACAAGCGTC GGTACAGGCG GTAGAAAACG TTGCCGTTGA GCCGCAGACT
GTCGCCGAAC CACAGGTGCC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTGATT
GCCGCGCCGG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGTGGCGCAA
GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT
GAAAACGTAG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT
GTTGTGGAGC ACACGGCAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAGCCG
CAGGACGTTG TCTGTGTTGA CGATCACAAC CACGCCAGCG CGCCGATGAC GCGTGCGCCA
GCGCCGGAAT ATGTGCCGGA AACCCCGCAC CATAGCGACT GGCAGCGTCC TTCCTTCCAC
TTTGAAGGTA AAGGCGCAGC AGGCGGACAC AGCGCCACAC GTGTCGCCAG CGCCCCGGCG
ACACGCCCAC AGCCGGTAGA ATGA
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| Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME
TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA
PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKAVET AAPKAEEKAE
RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQAQQQNA EARDTRQQET
AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE LPVQETEQEE RVQQVQPRRK
QRQLNQKVRF TNSAVVETVD TPVVVDEPRP VENVEQPVPA PRTELAKVDL PVIADIAPEQ
DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV
WIRYPIVRPQ ETQVVEEQRE ADLALPQPVV AEPQVIAATV ALEPQASVQA VENVAVEPQT
VAEPQVPEVV EVETTHPEVI AAPVDEQPQL IAESDTPVAQ EVIADAEPVA ETADASITVA
ENVADVVVVE PEEETKAEAA VVEHTAEETV IAPAQVVEKP QDVVCVDDHN HASAPMTRAP
APEYVPETPH HSDWQRPSFH FEGKGAAGGH SATRVASAPA TRPQPVE
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