Gene SeSA_A1192 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1192 
Symbol 
ID6515890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp1173950 
End bp1174831 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content49% 
IMG OID642746315 
Producttranscriptional regulator, RpiR family 
Protein accessionYP_002114124 
Protein GI194737668 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.497061 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.760306 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCCTC AACCCCCACG TCTTAAACCC GGAAAAATCC TTGATACTCT GGGTGCTATG 
CAAAAAAGCC TGACACGTGC CTCCCAGCGT ATTGCGCAAT ATATTTTAGC CTTCCCCAGA 
CAGGTGACAC AGTCATCTAT TGCCGATTTG TCGCGCGAAA CACAGGCCGG AGAAGCCACG 
GTTATTCGCT TTTGTCGCAC CCTGGGCTAT AAAGGTTTTC AGGATTTTAA AATGGACCTG 
GCCATTGAAC TTGCCACTAC CGAGTCTGAT GACAGTAGTC CTCTACTGGA TGCCGAAGTT 
AGCGAATCCG ACGATGCCCA CGCCATTGGT TTAAAATTGC AGAATACCAT TAGTAATGTA 
TTATCTGAAA CGCTAAATCT GCTTGATATG CAACAGGTTC TCGGTGTCGT GGATGCCCTA 
CGTCACTGTC ACTCAGTTTA TATCTTTGGT GTGGGCTCAT CGGGGATCAC GGCGCTGGAT 
ATGAAACACA AGCTAATGCG TATTGGTTTA CGGGGCGATG CGGTAAGCAA TAACCATTTT 
ATGTACATGC AGGCTACGCT ATTAAAAGCA GGCGATGTCG CGATGGGTGT CAGTCACTCG 
GGCACATCGC CAGAAACAGT GCATTCACTC CGATTGGCCC GACAGGCTGG TGCCACCACA 
GTCGCCATTA CCCATAATCT GGGTTCTCCA TTATGTGAAG AGGCCGATTT TTGCCTGATC 
AATGGTAATC GGCAAGGAAT GTTGCAGGGT GACTCGATCG GTACGAAAGC CGCGCAGCTT 
TTCGTCTTTG ACCTGCTCTA TACCCTTCTT GTACAGTCCT CGCCGGAACA GGCCCGAGAA 
AGCAAATTAC GGACAATGAA TGCCCTGGAC ATGACAAAAT AA
 
Protein sequence
MEPQPPRLKP GKILDTLGAM QKSLTRASQR IAQYILAFPR QVTQSSIADL SRETQAGEAT 
VIRFCRTLGY KGFQDFKMDL AIELATTESD DSSPLLDAEV SESDDAHAIG LKLQNTISNV 
LSETLNLLDM QQVLGVVDAL RHCHSVYIFG VGSSGITALD MKHKLMRIGL RGDAVSNNHF 
MYMQATLLKA GDVAMGVSHS GTSPETVHSL RLARQAGATT VAITHNLGSP LCEEADFCLI 
NGNRQGMLQG DSIGTKAAQL FVFDLLYTLL VQSSPEQARE SKLRTMNALD MTK