| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0298 |
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| Symbol | vasA |
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| ID | 6517659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | - |
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| Start bp | 308722 |
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| End bp | 310605 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642745459 |
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| Product | type VI secretion protein, family |
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| Protein accession | YP_002113284 |
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| Protein GI | 194736842 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.384287 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCCAC GGCTACTGGA GTATTACAAC CGCGAACTGA GCTACCTGCG GGAGACTGGT
GCTGAGTTCG CCACCCTCCA TCCCAAAATT GCCGCCCGAC TGGGGATGCA GGGAACCGAT
ATTGCCGACC CGTATGTGGA ACGCATGATC GAGGCGTTCA GCTTTCTGAG CGCCCGTACT
CAGCTAAAAA TTGACGCCGA GTTTCCCCGC TTCACACAGC GGTTACTGGA AGTCGTCAGC
CCCAATTACG TCACCCCCAC GCCATCGATG GCAGTGGTAA AGCTGTATCC CGATACGCAG
GAAGGCGACC TGGCGAAAGG GGTCACCGTG CCGCGCGATA CCGCGTTCGT TTCCCCTATC
CCGGAAGGCG AAAATACCGC CTGCCAGTTT CGCAGCAGCC AGGACGTCAC GCTGTGGCCG
CTGTCCATCG AGGAGGTACG CCTGACCGCC GCGCCACCGG ATATGCCCGC CCTGCACCGC
TATCTGCCGC CTAATATTCA TGTCGCCGGG GCATTGCGCA TCACCCTGCG AACCTTCGGG
GAACTGACTT TCAGCGAGCT GGCCGGTCCG GCACGGCTGC CCTTTTACCT CTGCGGCGAA
GAACGCATTG CGTCACACCT GTTTGAGCTG CTGCATACCA GCGCCGTCGC CACACTGGCC
GGTGAACCCG GTCACTTTGA CGGCGAACTG AATGTGAATC TTCAACACCC GGTGGCGCAC
GAAGGGCTGG AGCCAGGGCA GGGGCTGCTG CCGCTCGCCT GGAACGTGTT TCACGGCCAT
AATCTGCTGC ATGAATTTTT CGCCTGTCCG GAACGGTTTT ACTTCTTCAC CCCGACCGGA
TTGTCTGCCG GGTTACAAAA GGTGCAGGGC AATGTGGCGG AAATTGTCAT ACTGCTTAAT
CGCCTGCCGC CGGACTGGCT GATTCATCAG ACGGACGCTG CACAGTTCAG CCTGTTCTGT
ACGCCGGTGA TCAACCTGTT TCCCCGCACC ACCACCCGGA TTGAAGTCAC TCACAGCGTG
ACGGAACAGC ATCTGGTGGT AGATCGTACC CGTCCGCTGG ATTACGAGGT GTTTTCTGTT
CAGGAAGTCG AAGGCCTGGA AGCGGAAACC ACACGGAAGA TGATTTTTCG TCCGCTGTAT
CACACCCGTA ATAATGACGA AGGCAACCAC GGGCGTTATT TTTCACTGCG TCGTGAACCG
CGCCGCTCGT CAGAAAATGC CCGCCGCTAT GGCACCCGAA CCCCCTATAC CGGCTCGGAA
ATCTTCCTGT CGCTGGTTGA TCAGCATGAA GCGCCCTACC CGGAAAATCT GCGCCATATC
ACCGTCACGG CAATGGTGAC TAACCGCGAT CTGCCCTGTC TTATTCCACG TAATGGCCGG
GATGATCTGA CCGTAGATGC GGCGATCCCG GTGGCGGGCG TGGGTCTTAT CAGACCGCCG
CGCCCGCCGC AGCCGCCGCT GGCTGAACGC GAAATGGCCT GGCGGCTGAT CCGGCAGTTG
TCGTTTAATT ATCTGCCGCT GGCCGATCTG GATCACCGCA CCGGCGGCCA GGCGCTGCGC
GATCTGCTGA ATCTGTTTAT TCCGGCTCAC GACAGCCCGC AGTCGCGCCA GGTGCGCAGC
CTGATTGGCT GCAAAACCAC CCCAGTAACC CGCCGCCTGC CCGGCTCCGG TCTGTTGGTC
TATGGCCGGG GCGTCAGTTG CGAACTGACC GTGGACGAAG AAGGATTTTC CGGTATCAGT
CCTTACCTGT TCGGTCTGGT GCTGGAACAC TATATTGCCC GCCATGTTTC CATTAATACC
TTCTCACAGA TGACGCTGCA CTCGATGCAA CGCGGGCATG TCATGACCTG GCCGGTAAGA
ACCGGGCAAC GGGGGAGCGT ATGA
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| Protein sequence | MDPRLLEYYN RELSYLRETG AEFATLHPKI AARLGMQGTD IADPYVERMI EAFSFLSART
QLKIDAEFPR FTQRLLEVVS PNYVTPTPSM AVVKLYPDTQ EGDLAKGVTV PRDTAFVSPI
PEGENTACQF RSSQDVTLWP LSIEEVRLTA APPDMPALHR YLPPNIHVAG ALRITLRTFG
ELTFSELAGP ARLPFYLCGE ERIASHLFEL LHTSAVATLA GEPGHFDGEL NVNLQHPVAH
EGLEPGQGLL PLAWNVFHGH NLLHEFFACP ERFYFFTPTG LSAGLQKVQG NVAEIVILLN
RLPPDWLIHQ TDAAQFSLFC TPVINLFPRT TTRIEVTHSV TEQHLVVDRT RPLDYEVFSV
QEVEGLEAET TRKMIFRPLY HTRNNDEGNH GRYFSLRREP RRSSENARRY GTRTPYTGSE
IFLSLVDQHE APYPENLRHI TVTAMVTNRD LPCLIPRNGR DDLTVDAAIP VAGVGLIRPP
RPPQPPLAER EMAWRLIRQL SFNYLPLADL DHRTGGQALR DLLNLFIPAH DSPQSRQVRS
LIGCKTTPVT RRLPGSGLLV YGRGVSCELT VDEEGFSGIS PYLFGLVLEH YIARHVSINT
FSQMTLHSMQ RGHVMTWPVR TGQRGSV
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