Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A0025 |
Symbol | |
ID | 6517109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 25762 |
End bp | 28428 |
Gene Length | 2667 bp |
Protein Length | 888 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642745201 |
Product | outer membrane usher protein FimD |
Protein accession | YP_002113033 |
Protein GI | 194733954 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0588197 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0296149 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCGCAAC GACGCCAGCA CGCGTTTGTC CAGCTTCATG ATGTTATGCG TAATCAGCTT TTCATGACGC GATATTACTC CAGCGTAGCT AAACCCGTAT TAACCCCGCT GGCGTTGGCT ATCGCATTGG CGCCTGCGCC GGGGTGGGCG GAAAACTATT TCAACCCGGC ATTTCTGTCT GACGACCCGT CTGCGGTGGC CGACTTATCG ACCTTTTCCC GTAATGCCCA GGCGGCGGGA ATGTATCGCG TTGACGTTTA CCTGAACAAT ACGTTTCTCG CGACCAGAGA CATTGCCTTC CAGGCGGTGA AAACGACGGG AAAAAGCGCG CCCACCGATG ACAGCGGATT ACGCGCCTGC CTGACGCCTG AAATGCTTAA AAATATGGGG GTAAACACCG GGGCGTTTCC ACTGTTGGCG AAGGCGGCGG CGGGAAGTTG CCCGGATCTC GCCAGTGCGA TACCGGCCGC CCGGACCCGC TTTGATTTTG CGCAGCAACG TCTCGACATT AGCATCCCGC AGGCGGCGAT GGTTGCCAGC GCCAGAGGCT ATATCCCACC GCAATACTGG GATGAAGGTA TTAACGCGTT GCTATTGAAT TACACCTTTA CCGGCGCGAA TAGTCAGGAT CGGAGCGCAG GCGGCAGTGC GGAGAACAGC TATTTTCTTG GATTGAATAG CGGCCTTAAT CTGGGGGCCT GGCGGTTACG CGACTACTCC ACATGGAACG CGAATAGCGG CGATCAGAAT AGCGACAGCG ACTGGCAGCA CATCAGTACT TATCTGGAAC GTGATGTGGT CTTTTTGCAG GGAGAACTGA CGGCAGGCGA TAGTTATACC CCCTCCGCAT TATTCGACAG CATTCCTTTT CGCGGGCTAC AACTGGCGTC TGACGACAAT ATGTTGCCAG ACAGCATGAA AGGCTTCGCG CCGACCATTC ACGGCATTGC CAGAAGCAAC GCGCAAGTGA CCATTCGGCA AAACGGCTAC ATCATCAATC AGCGCTATGT GCCGCCCGGG GCATTTACTA TTAATGATCT CTATCCCACC GCCGCCAGCG GCGATTTGAC TGTGGAAGTC AAAGAGTCTG ACGGTTCTAT TAATCGCTAT AACGTGCCCT ATTCCGCCGT GCCGATTCTA CAACGAGAAG GGCGGCTGAA GTATGCGGCG ACGGTGGCGG AGTATCGTAG CGATAGTAGT CAAAAAGAGA AGGTGAAATT CACTCAGGCG ACCTTGATAT GGGGGTTACC GCATGGTTTT ACGCTGTATG GCGGAACACA ACTTTCCAGT CATTATCACG CGCTGGCGAT CGGCAGCGGC GCAAATCTGG GCGACTGGGG CGCGGTGTCG CTGGATGTCA CCCAGGCTAC CAGTACGCTG GCGGATAATA ACACCTACCA GGGGCAATCG CTGCGTTTCC TGTATGCCAA ATCGCTTGCA CAGTCAGGAA CCAATTTACA GCTTATGGGC TATCGCTATT CAACCTCGGG CTTTTATACG CTGGATGATA CCACGTGGAA ACGGATGAGC GGCTATGACG ATGACAGTCG GACTGACAGC GATAAAAGCA GGCCGGAATG GGCGGATTAT TACAATCTTT ATTATACCAG AAGGGGGAAA GTACAACTCG ATATCAATCA ACAGCTAGGC GGGTTGGGAT CGCTTTTTAT TACCGGCAGT CAACAAAGTT ACTGGCACAC TGATGAAAAG GATTCTTTGT TGCAGGTGGG ATACAGCGAT ACGCTGGCGG GTATTGCATG GAGTGTTTCT TATAACAATA ACAAATCCGC AGGCGATGCG GAGCGCGATC AAATTTTCGC GCTGAATATC TCGGTGCCGC TAAGTCAATG GCTGCAACAC GATGATGAGG TTACGCGCCA TCACAATGTT TACGCTACCT TTAGCACCAG TACGGACAAA CAGCATAACG TTACGCAGAA TGCGGGCCTT AGCGGCACAC TGCTGGACGA AAACAATCTT AGTTACAACA TACAGCAAGG TTATCAAAAT CACGGTATTG GCGAAAGCGG CTCCGCCAGC CTGGAATACG ATGGGGCGAA AGGCAACGCC AACATTGGCT ATAACGTTAG CGATAACGGC GATTACCAGC AGGTGAATTA TGGCCTGAGC GGCGGCCTGG TGGCGCACGT GCATGGAGTG ACGCTAAGCC AGCCGCTGGG CAATACCAAT ATTTTGATTG CCGCGCCGGG CGCAGCCAAC GTCGGCGTTG TCGACCAGCC GGGTATTCAT ACGGACGCGC GTGGCTATGC GGTGGTGCCG TATGCGACGA CATATCGCCA AAACCGTATG GCGCTGGACG TTAACGCGAT GGCTGATGAT GTCGATATTG ATGACGCGGT GACTCGCGTT GTGCCGACCG AAGGCGCGCT GGTTCTGGCC CGCTTTAAAG CGCGAGTCGG CGCGCGTGCC CTGGTAACGC TGAATCATAA CGGTAAGCCT GTACCCTTTG GCGCAACGGT GACGGTGAAT GATCGTCATG CGGAGGCGAT TGTTGACGAG GCCGGGGAAG TCTATCTTTC CGGGTTGTCA GCGCAAGGCA TTCTGCACGT TCGCTGGGGG AACCTGCCGG ATCAACAGTG TGTCGCGTCC TATCATCTCT CTTCCTCCCG TCAGATTCTG AGTCGACAAC ATGCGGAGTG TCATTAA
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Protein sequence | MAQRRQHAFV QLHDVMRNQL FMTRYYSSVA KPVLTPLALA IALAPAPGWA ENYFNPAFLS DDPSAVADLS TFSRNAQAAG MYRVDVYLNN TFLATRDIAF QAVKTTGKSA PTDDSGLRAC LTPEMLKNMG VNTGAFPLLA KAAAGSCPDL ASAIPAARTR FDFAQQRLDI SIPQAAMVAS ARGYIPPQYW DEGINALLLN YTFTGANSQD RSAGGSAENS YFLGLNSGLN LGAWRLRDYS TWNANSGDQN SDSDWQHIST YLERDVVFLQ GELTAGDSYT PSALFDSIPF RGLQLASDDN MLPDSMKGFA PTIHGIARSN AQVTIRQNGY IINQRYVPPG AFTINDLYPT AASGDLTVEV KESDGSINRY NVPYSAVPIL QREGRLKYAA TVAEYRSDSS QKEKVKFTQA TLIWGLPHGF TLYGGTQLSS HYHALAIGSG ANLGDWGAVS LDVTQATSTL ADNNTYQGQS LRFLYAKSLA QSGTNLQLMG YRYSTSGFYT LDDTTWKRMS GYDDDSRTDS DKSRPEWADY YNLYYTRRGK VQLDINQQLG GLGSLFITGS QQSYWHTDEK DSLLQVGYSD TLAGIAWSVS YNNNKSAGDA ERDQIFALNI SVPLSQWLQH DDEVTRHHNV YATFSTSTDK QHNVTQNAGL SGTLLDENNL SYNIQQGYQN HGIGESGSAS LEYDGAKGNA NIGYNVSDNG DYQQVNYGLS GGLVAHVHGV TLSQPLGNTN ILIAAPGAAN VGVVDQPGIH TDARGYAVVP YATTYRQNRM ALDVNAMADD VDIDDAVTRV VPTEGALVLA RFKARVGARA LVTLNHNGKP VPFGATVTVN DRHAEAIVDE AGEVYLSGLS AQGILHVRWG NLPDQQCVAS YHLSSSRQIL SRQHAECH
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