Gene SeSA_A0024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0024 
Symbol 
ID6518663 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp25116 
End bp25802 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content51% 
IMG OID642745200 
Productchaperone protein FimC 
Protein accessionYP_002113032 
Protein GI194735713 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3121] P pilus assembly protein, chaperone PapD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.117286 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0585411 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAA ACGTACCGAT TTTCCTTCGA TTATTGCTAC TGCTGTCGGC GGCCGGCCTG 
TCGTTTGCCG CGCAGGCGGG AGGCATTGCG CTGGGCGCGA CCAGGGTGAT TTATCCGCAG
GGAAGTAAGC AAACCTCCTT GCCGATTATT AATTCTTCTG CCAGCAATGT TTTTTTAATT
CAGTCATGGG TCGCCAATGC CGATGGTTCA CGCTCGACGG ATTTTATCAT TACGCCGCCT
CTCTTTGTGA TCCAGCCTAA AAAAGAAAAT ATATTACGTA TTATGTATGT CGGGCCGTCA
TTACCGACCG ATCGCGAAAG CGTATTTTAT TTAAACAGTA AAGCGATACC CTCTGTCGAT
AAAAATAAAT TGACCGGCAA CTCCCTGCAA ATTGCGACGC AAAGCGTGAT TAAGCTATTT
ATCCGCCCGA AAAATCTGGC GGAGGCGCCA GCTCATGCCC CGTCGACGCT TCGCTGCCGT
AACGAGCGCG GCCAGCTAAC GATTACTAAC CCTTCGCCGT ACTACGTTTC GATGGTTGAA
CTGTACAGCG CGGGGAAAAA ACTGCCGAAT ACTATGGTAC CGCCGAAAGG CGCGATCACT
CTCCCGGCGA CGCCCGGCCA GGTATCTTTG CGCACGGTAA ACGATTTTGG CGCAACGACG
CCAGCACGCG TTTGTCCAGC TTCATGA
 
Protein sequence
MKKNVPIFLR LLLLLSAAGL SFAAQAGGIA LGATRVIYPQ GSKQTSLPII NSSASNVFLI 
QSWVANADGS RSTDFIITPP LFVIQPKKEN ILRIMYVGPS LPTDRESVFY LNSKAIPSVD
KNKLTGNSLQ IATQSVIKLF IRPKNLAEAP AHAPSTLRCR NERGQLTITN PSPYYVSMVE
LYSAGKKLPN TMVPPKGAIT LPATPGQVSL RTVNDFGATT PARVCPAS