| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C2789 |
|---|
| Symbol | pbpC |
|---|
| ID | 6489514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 2722125 |
|---|
| End bp | 2724440 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642742962 |
|---|
| Product | penicillin-binding protein 1C |
|---|
| Protein accession | YP_002046589 |
|---|
| Protein GI | 194451400 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
|---|
| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0400715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 87 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGTT GGCGTGGTAA ACGTGGCCGC TGGCTGTGGC TGGCGGGCGC GCCGCTTTTT
ATTTTCCTGG CGTTATGGGC AGCGGATAAA CTCTGGCCGC TGCCGCTCAA TGAGGTCCAT
CCTGCGCGGG TCGTGGTAGC CCATGACGGT ACGCCGCTGT GGCGCTTTGC CGACGCCGGG
GGGATCTGGC GTTATCCGGT GACGATTGAA GAGGTCTCTC CCCGCTACCT GGAGGCCCTA
ATCAATTACG AAGATCGCTG GTTCTGGCGG CACCCTGGCG TTAACCCTTT CTCCGTCGCG
CGCGCGGCAT GGCAGGATCT TACCGCCGGG CGCGTTATTT CCGGCGGCAG TACGCTGACT
ATGCAGGTGG CGAGACTGCT GGACCCGCAT TCGCGCACGT TCGGCGGTAA AATCCGCCAG
CTTTGGCGCG CCCTCCAGCT TGAATGGCAT TTGTCCAAGC GCGATATCCT GACGCTGTAC
CTGAACCGCG CGCCGTTCGG CGGCACGCTA CAGGGTATTG GCGCTGCAAG CTGGGCCTAC
TTCGGCAAGC CGCCCGCGCG CCTGAGCTAC GCTGACGCGG CGCTGCTGGC CGTATTGCCG
CAGGCGCCGA GCCGGTTACG CCCCGACCGC TGGCCAGCGA GAGCTGAAGC GGCACGAAAT
AAAGTGCTGG ATCGGATGGC GGCGCAGGGC GTCTGGCCTG CCGAAACGGT ACGCGAGTCG
CGTGAAGAGC CGGTCTGGCT GGCGCCGCGT CAAATGCCGC AACTGGCGCC GCTTTTTGCC
CGAATGATGT TGAGTAAAAG CCAGAACGAC AAAATTGTGA CCACGCTGGA CGCCGGATTG
CAGCGGCAAC TGGAAGATCT GGCGCGGGCA TGGAAAGGGC GGCTGCCTGC ACGCAGTTCG
TTGGCGATGA TCGTTGTCGA TCATACCGAT ATGAGCGTGC GCGGCTGGGT CGGATCGGTA
GACCTTAATG ACGACAGCCG TTTTGGTCAT GTCGACATGG TAACGGCGAT CCGATCGCCG
GGATCGGTAC TCAAACCCTT TGTGTACGGT CTGGCGCTGG ATGACGGCTT GATCCATCCC
GCATCATTAT TACAGGACGT TCCGCGCCGC ACCGGGGATT ACCGCCCGGG AAACTTCGAC
AGCGGATTTC ACGGCCCGGT CAGCATGAGC GACGCGCTGG TACGCTCGCT GAATCTGCCT
GCCGTTCAGG TACTTGAAGC CTATGGGCCG AAACGATTTG CGGCAAAACT GCGTAACGTC
GGCCTGCCGC TATATTTGCC TGCTGGCGCG GCGCCCAATC TTTCGCTGAT TCTGGGCGGC
GCGGGCGCGC GGCTTGACGA GATGGCGGCG GCATACAGCG CATTCGCTCG TCATGGGAAA
GCGGCGAAAC TACGGTTACA GCCGGACGAT CCGCTGTCGG AAAGACCATT AATGTCGCCG
GGAGCGGCGT GGATCATTCG ACGGATTATG GCGGATGAAG CGCAACCCTT GCCGGATAAC
GCGCTGCCGC GCATTTTGCC GTTGGCGTGG AAAACCGGCA CCAGCTACGG CTATCGCGAT
GCGTGGGCTA TTGGCGTTAA CGCGCGCTAT ATCATCGGCA TCTGGACAGG CAGACCCGAC
GGCACGCCTG TGGTGGGGCA ATTTGGTTTT GCCAGCGCGG TGCCATTGCT TAATCAGGTC
AATAATCTGT TACTGGCGCA TACGGGACGC CTGCCGGAAG ATCCGCGTCC GCAGACGGTA
AGCCGTGGCG TCATTTGCTG GCCGGGCGGA CAGACTCTGC CTGCCGGGGA CAGCAACTGT
CGCCGCCGAC TGGCGACATG GCTGCTTGAC GACAGCCAGC CGCCCACGCT GCTGTTACCT
GAGCAGGAAG ACATCAACGG TATTCGTTTC CCGGTCTGGC TGGATGATAC GGGGCGGCGT
GTCGCTGCCG ACTGTCCGCA GGCGCGTGCG CATACGTTTA TCGTCTGGCC GCGGCCGCTG
GAGCCGTGGC TGCCGCCTGC GGAAAGACGT AGCGCCCGCT TGCCCGCGGC GTCCGACCAC
TGTCCGCCGC TACAGGGCAA TGACGCCGCG CCGTTAATGC TGTCAGGAGT GAGGGATGGC
GCGGTGATCA GGCAACTGCC AGGCCAGGAA AACGTCACGC TGCCCGTCTC GACTACCGGC
GGCAAAGGGC GTCGCTGGTG GTTTTTAAAT GGCGAACCTG TTAATGGCGA AAATAATCGC
CTTTCTTTAT TACTCAATAT CGCTGGACGT TATCAACTTG TCGTAATGGA TGAGTCCGGT
CAGGTTGCAG CGGTTAATTT TGAATTAATA CGTTAA
|
|---|
| Protein sequence | MNGWRGKRGR WLWLAGAPLF IFLALWAADK LWPLPLNEVH PARVVVAHDG TPLWRFADAG
GIWRYPVTIE EVSPRYLEAL INYEDRWFWR HPGVNPFSVA RAAWQDLTAG RVISGGSTLT
MQVARLLDPH SRTFGGKIRQ LWRALQLEWH LSKRDILTLY LNRAPFGGTL QGIGAASWAY
FGKPPARLSY ADAALLAVLP QAPSRLRPDR WPARAEAARN KVLDRMAAQG VWPAETVRES
REEPVWLAPR QMPQLAPLFA RMMLSKSQND KIVTTLDAGL QRQLEDLARA WKGRLPARSS
LAMIVVDHTD MSVRGWVGSV DLNDDSRFGH VDMVTAIRSP GSVLKPFVYG LALDDGLIHP
ASLLQDVPRR TGDYRPGNFD SGFHGPVSMS DALVRSLNLP AVQVLEAYGP KRFAAKLRNV
GLPLYLPAGA APNLSLILGG AGARLDEMAA AYSAFARHGK AAKLRLQPDD PLSERPLMSP
GAAWIIRRIM ADEAQPLPDN ALPRILPLAW KTGTSYGYRD AWAIGVNARY IIGIWTGRPD
GTPVVGQFGF ASAVPLLNQV NNLLLAHTGR LPEDPRPQTV SRGVICWPGG QTLPAGDSNC
RRRLATWLLD DSQPPTLLLP EQEDINGIRF PVWLDDTGRR VAADCPQARA HTFIVWPRPL
EPWLPPAERR SARLPAASDH CPPLQGNDAA PLMLSGVRDG AVIRQLPGQE NVTLPVSTTG
GKGRRWWFLN GEPVNGENNR LSLLLNIAGR YQLVVMDESG QVAAVNFELI R
|
|---|
| |