Gene SeHA_C1333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C1333 
SymbollolD 
ID6490993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp1308211 
End bp1308912 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content55% 
IMG OID642741568 
Productlipoprotein transporter ATP-binding subunit 
Protein accessionYP_002045218 
Protein GI194447713 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID[TIGR02211] lipoprotein releasing system, ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.00479967 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATAAGA TCCTGTTGCA ATGCGACAAC CTGTGCAAAC GCTATCAGGA AGGCACCGTA 
CAAACCGACG TGTTGCACGA TGTCAGCTTC AGTATCGGCG AAGGCGAAAT GATGGCGATC
GTCGGCAGTT CCGGTTCGGG TAAAAGTACG TTGCTGCATC TGTTAGGCGG GCTGGATACG
CCCACCTCCG GCGATGTGAT TTTTAGCGGC CAGCCGATGA GCAAACTCTC TTCTGCGGCA
AAAGCGGAAT TACGTAACCA GAAACTGGGG TTTATCTATC AGTTTCATCA TCTCCTGCCG
GATTTTACGG CGCTGGAAAA CGTGGCGATG CCATTATTGA TTGGCAAAAA GAAACCGGCG
GAGATTGACG CTCGGGCGCG AGAAATGCTG CATGCTGTAG GGCTGGAGCA TCGCGCAACC
CATCGACCTT CGGAACTTTC CGGTGGTGAG CGCCAGCGTG TCGCGATAGC GCGCGCGTTG
GTGAATAACC CGCGTCTGGT ACTGGCGGAT GAGCCGACCG GTAATCTGGA TGCGCGTAAT
GCCGACAGTA TTTTTGAGCT TCTGGGCGAG TTAAATCGTC TGCAGGGAAC CGCGTTTCTG
GTGGTGACTC ACGATTTGCA ACTGGCGAAA CGTATGAGCC GCCAACTTGA GATGCGCGAT
GGCCGCCTGA CGGCGGAACT GAGCCTGATG GGGGCTGAGT AA
 
Protein sequence
MNKILLQCDN LCKRYQEGTV QTDVLHDVSF SIGEGEMMAI VGSSGSGKST LLHLLGGLDT 
PTSGDVIFSG QPMSKLSSAA KAELRNQKLG FIYQFHHLLP DFTALENVAM PLLIGKKKPA
EIDARAREML HAVGLEHRAT HRPSELSGGE RQRVAIARAL VNNPRLVLAD EPTGNLDARN
ADSIFELLGE LNRLQGTAFL VVTHDLQLAK RMSRQLEMRD GRLTAELSLM GAE