Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1297 |
Symbol | rne |
ID | 6490966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 1272700 |
End bp | 1275903 |
Gene Length | 3204 bp |
Protein Length | 1067 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642741534 |
Product | ribonuclease E |
Protein accession | YP_002045184 |
Protein GI | 194449847 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 0.0000148033 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC ATCTATAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC AGTCTGGCGG GCAGCTACCT GGTACTGATG CCGAATAACC CGCGCGCGGG TGGTATTTCC CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGTTGGCCAG CCTGGAACTT CCTGAAGGGA TGGGGCTTAT CGTGCGTACC GCGGGCGTGG GTAAATCCGC CGAAGCGTTG CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAGGCCA TTCAGAAAGC CGCTGAAAGC CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC TATCTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CAAAAGTGAT GGAAATGGCG CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACCGCGTTC AACACCAATC TCGAAGCGGC CGACGAGATT GCCCGCCAGC TGCGTCTGCG CGACCTGGGC GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTGC GTCACCAGCG CGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCGCTGGG CGAATCCAGC CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG CTGTCCATTC TGCGCTTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTGAAC GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATTG TCCCGAACGA TCAGATGGAA ACGCCGCACT ATTCCGTGCT ACGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCGGCG CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC GCGCAGCCTG CCCAGCCGGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC AGCGGTGAAG AAACGAAAGC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG CGTCAGCAGG ATCGTCGCAA GCCACGGCAG AACAACCGTC GCGATCGTAA CGAACGCCGC GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT AACCGTCGCC AGGCGCAGCA GCAAAATGCA GAAACGCGCG ACACCCGCCA GCAGGAAACG GCGGAAAAAG TGAAAACTGG CGATGAGCAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC CGCCGCAATG ATGACAAGCG TCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA CAGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAC ACGCCGGTCG TCGTCGACGA ACCACGCCCG GTTGAAAACG TTGAACAGCC CGTTCCAGCG CCGCGTACCG AGCTGGCGAA AGTTGATTTA CCTGTCGTTG CCGATATCAC GCCGGAGCAG GATGATAGCG TAGAACCTCG CGATAATACC GGTATGCCGC GTCGCTCCCG CCGTTCTCCG CGCCACCTGC GCGTAAGCGG TCAGCGTCGC CGTCGCTATC GTGACGAGCG CTACCCGACA CAATCGCCAA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCGTC CGGTAAAGTC TGGATCCGCT ACCCGATTGT CCGTCCTCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA GCAGATCTGG CGCTGCCACA ACCGGTTGTC GCTGAACAGC AGGTTATCGC TGCGACCGTA GCGCTCGAAC CACAAGCGTC GATACAGGCG GTAGAAAACG TTGCCGTTGA GCCGCAGACC GTCGCCGAAC CACAGGCGCC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTGATT GCCGCGCCGG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGTGGCGCAA GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT GAAAACGTAG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT GTTGTGGAGC ACACGGCAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAACCG CAGGACGTTG TCTGCGTTGA CGATCATAAC CACGCCAGCG CGCCGATGAC GCGTGCGCCA GCGCCGGAAT ATGTGCCGGA AACCCCGCAC CATAGCGACT GGCAGCGCCC TTCCTTCCAC TTTGAAGGTA AAGGCGCAGC AGGCGGACAC AGCGCCACAC GTCACGCCAG CGCCCCGGCG ACACGCCCAC AGCCGGTAGA ATGA
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Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKAVET AAPKAEEKAE RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQAQQQNA ETRDTRQQET AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE QPVQETEQEE RVQQVQPRRK QRQLNQKVRF TNSAVVETVD TPVVVDEPRP VENVEQPVPA PRTELAKVDL PVVADITPEQ DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV WIRYPIVRPQ ETQVVEEQRE ADLALPQPVV AEQQVIAATV ALEPQASIQA VENVAVEPQT VAEPQAPEVV EVETTHPEVI AAPVDEQPQL IAESDTPVAQ EVIADAEPVA ETADASITVA ENVADVVVVE PEEETKAEAA VVEHTAEETV IAPAQVVEKP QDVVCVDDHN HASAPMTRAP APEYVPETPH HSDWQRPSFH FEGKGAAGGH SATRHASAPA TRPQPVE
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