Gene SeHA_C0323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C0323 
SymbolicmF 
ID6490871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp331829 
End bp335698 
Gene Length3870 bp 
Protein Length1289 aa 
Translation table11 
GC content62% 
IMG OID642740600 
Producttype VI secretion protein IcmF 
Protein accessionYP_002044268 
Protein GI194449827 
COG category[S] Function unknown 
COG ID[COG3523] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03348] type VI secretion protein IcmF 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAAT TTCTTAGTCT GCTTTTTTCC CGGCGCGCGC TGGCGATTGT GGGCGTTCTG 
GTTCTGGCGC TGCTGGTCTG GTTTGTCGGG CCGCTGGTGT CATTTGATAC CCTGCGCCCG
CTGGCCTCCG TGGGCAGCCG GGTGGTGACC ATTGCCCTGT TGCTGATGTT GCTGGTACTG
TGGCTGGTCA ACTGGTCGAT GAGTATCATC GGCATCAGTG TCCTGTGCCT GGCGATTGGC
TTCGTCACAC CGCTGCTGGC CCTGGGCGAT GTCCATCCGT TTGCGCCGCT GTGGGTCCGC
CTGACCCTGA TTGGTTTCAT CCTGCTGATG TACGCGCTGT ACGGCCTGTA CCGGCTGTGG
CGTGCGCTGC GTATGGATGA ACAACTGCTG CGTCGCTTCC TGCATCCGCG CGGGGAAGAG
GTACCGGTGG CTGGCGAGAT CAAAGCCGAC CTGCGCACCG TCAACCATAT TGTCACGCAG
GCCATCCGGC AACTGCGGCA GTTGCGGGTG GACATGCCCG GCTGGCGTAA AATCTTCGAG
GGAAAACGCT TTCTGTATGA GCTGCCGTGG TTCATGGTGG TCGGCAGTCC CGGCGATGGC
AAAACCACGG CCCTGCTGAA CACCGGATTG CAGTTCCCGC TGGCGGAGCA AATGGAGCAG
ACCTCGCGTA TCCTGACAGT GCCGGGTGGC GGCACGCTAC ACTGCGACTG GTGGTTTACC
AACGAAGCAG TGTTGATTGA TACGGCCGGA CGCTACGCCC GCCACGATGA CGGCGGCGAA
GCGAGCGCCG CGCAGCGTAA CGCCGGAGAG TGGCAGGGCT TTCTCGGTCT GCTGCGTAAA
CATCGCCCCG GCGCGCCGCT TAACGGCGTG ATCCTGACGC TAAACGTGGC GGATTTAACC
GCACAGTCAC CGGCGGAACG CCTGGCGGCC TGCGCAGCTC TGCGGGCGCG ACTGGCAGAA
CTGCGCGAGA CCCTGGGGAT TCGCTTTCCG GTCTATCTGG TGGTCACCAA AATGGATTTG
TTGCCGGGGT TCAGCGAGTA TTTTCGCACG CTGACCAGCC ATCTTCGCGC ACAAATCTGG
GGCTTCACGT TGCCGTACAG CCGCAGGCGA AAAACGGGCG ACCCGCAGGC GCTGCATGCC
GCCTGCGCGC AGGAGCTGGC GCGCCTGACG CTGCGGCTGG ATCAGGGACT GGATACCCGG
TTACAGGAAG AGTACGACCT TAAAAGCCTC CAGCGGCTGT ATACCTTCCC GCGTGAGTTC
GCCGCCCTCG GCGAGCCGTT GCTGGAGGCT ATTGAACAGA TCTTCCTCGA TTCAAAATTC
GATGCCACGC AACTGAATAA CACGCTGCGC GGGGTGTTTT TCACCAGCGC CGCGCAGGCG
CAGGCCGACG CCGTGGCCGA CCAGTTGAGT ATCTGGCAGC GCTTTGTCCG GGCGATAAAA
ACCGCCCGTG GCGAATCCTC CGCCTCTCTC CCACACGCTC TGCCGGACGG CAACCGCAGC
TACTTTCTGC ATGACCTGCT GACACAGTTT ATTTTCCGTG AAGCGCACCT GGTGGAGCCA
AACCTCCAGT GGGCCTGGCG TTACCGCCTG CTGCGCCTCG GCGGGCACCT GCTGGTACTG
GTGCTGGCAT TCCTGTTGTG GCAGGGGATG CAGACCAGCC AGCAGACCAA CGGCGACTAT
CTGAATGAAA TCAGCGCCCG CGCGACCCGG CTGGACGGCG AGGTGAAAGC CTACACCGGT
AAACCGGCGA TGGCTCCCGT CCCGACACTG CTGGATAGCG CAAGGGAACT GTCCGCCTGG
CCGGAACTGG ACCCGGACGC GCCGCCGCTG ACCTGGCGCT ACGGCCTGTA CAGCGTACCG
CCGGTAACCG ACAGCGTGGC GTCGCTGTAC AACCGTCTGC TGGATCAACT GCTGCTGCCG
CCGCTGGTGA AACGGATGGA GTATGTGCTG GCGGACGCCA TTGCCCGTCA GGACAGTAAA
GCTGCGTATG ATGCCCTGCG CATCTATCTG CTACTGAATC TGGATAAAGA TCACGAAGAT
AAATACAACG CGGCGGAGAT CCAGTCGTGG GTGATTAACG ATCTGGGGAA CAGCGACAGC
GTGGCCGGGT TCGGCGGGCG CGCCGCCGTG CTGACGCATA TCGAAGCGCT GTTTGACGGC
AGCCGGGTGG TGCATTCACC GTATGAGAAA AATGAGGCAC TGATCCGCCA GGCGCGGGCA
TTCCTCGACG GTCACACCAG TACCGAGCGT ATCTATGCGC GGGCGCTGGC GGCGATGGAG
AGCGAAGCGC CGCAGGAGTT CACGCTGGTA CGCGCCGTCG GCGCGGATGC GGGAACGGTG
TTTGTGCGTA GCAACGGCGC GCCGCTGGAT CGGGGCGTGC CGGGTATTTT TACCCGTGAA
GGATACCGGG AGCTGTTCGA CAAACGATTA CCGGAATTTG TGGCGGCGGC GACGGCGAAC
GATGGCTGGG TGATGGGCCG GGAGAGTACG CCAAAAAAGC TGACTGACAG CCTGCGCAGC
CAGATACCGG GGCAGGAGCA GTCTGTCGCC CGCGAAGTCC GCCGTTTGTA CCTGACGGAA
TATGCCCGCC GCTGGCAGGA TTTTCTGGAC AGTATCCATA GTATCAACAG TGCCGGGGAA
GAGGGCAGTT CCGGCCTGGC CTATGATTTA CAGGTGCTGC GCACCCTGGC GTCGCCGGAC
TCACCGCTGA TGCGGCTGGG AAAAGCGGTG GTGGAGCAGA CCACGCTGGT GCCGCCGCCG
GACCCGCAGG CCAGACAGAA ACAGCTGGCG CAGCGCGCAT CCGGTAACGC GGGGAAAGTG
GTACAGACGG CAAAACTGTT CCAGGATATT CACCCGGAAG AACGGCTGGA AAAAACGCTG
GTGGATGACC GTTTCGCCGC GCTGCGCGAG GTCATTGCCG GGCGGACGGA CGGCGGACAG
AGCGGCGGTG GGACGATGCA GATCGCTTCG CTGCTGACCA TGCTCAACGA GTATTACACC
CAACTGACCA TTGCTGATAG CGCGCTGGCG GCGGGGACGT TGCCAGCGCG CATTACTGCC
GCAGACAAGT TGCAACTGGA GGCGGCGAAA CTGCCTGCGC CGCTGAAAAA CATCCTGCTG
GATCTGACGA AGCAGGGAAC GCGCAAAATC AACGCCGGGA CCGGCGACGT GCTGAACACC
CAGATGGAGG CGATGATGGG CGACGACTGC CGTGACGCCA TCGACGGGCG CTATCCGTTC
GCCGACAGTC CGCAGGAGGT CAGCGCCGAG GACTTTAACC GCATCTTCGC CAGCGGCGGC
GTACTGGATG CTTTCTGGAG CAAACAACTG GCTCCGCTGG CGGACACCGC CAGCGACCCG
TGGCGCTACA AACCGACCGA AGGCAACATG ACGTTGCAGG GGCCGGATTT AACGCCGTTT
CAGCAGGCGA AGCAGATCCG CAGCGTATTT TTTAACAGCG AGGGCGGGAA AAAATTTTCC
TGGTCGATGC AGATTAGCGT GGTGGATATG GACCCGGCCA TCACGGAACT GGTGATTGAT
ATCGACGGCC AGGTGCTGCG CTACGCCCAT GGTCCGGACC GTCCCCTGAA AGTAACGTGG
CCGGGACCGC GCAACGGCTC GATGGCGGAA ATCACCGCCA GCCCGCGTAT TCGCCAGGAC
ACCTCAACGC TACTGACCGG CGGGCCGTGG GCGCTGTTTC ATCTGCTGGA CGCCGGAATG
GTACAGGAAA CGGCGGTGCG GGGGCGCCAA TTGGTGGAAT ATGATTTTGA CGGTCGCCGG
GTGGTGCTGG AAATCACTGC CGGGCGGGAT TTTAACCCGG TCAGCCGGGA GCTGTTGCAG
AACTTCAGTT GTCCGGCGAG GGCGTTGTAA
 
Protein sequence
MQKFLSLLFS RRALAIVGVL VLALLVWFVG PLVSFDTLRP LASVGSRVVT IALLLMLLVL 
WLVNWSMSII GISVLCLAIG FVTPLLALGD VHPFAPLWVR LTLIGFILLM YALYGLYRLW
RALRMDEQLL RRFLHPRGEE VPVAGEIKAD LRTVNHIVTQ AIRQLRQLRV DMPGWRKIFE
GKRFLYELPW FMVVGSPGDG KTTALLNTGL QFPLAEQMEQ TSRILTVPGG GTLHCDWWFT
NEAVLIDTAG RYARHDDGGE ASAAQRNAGE WQGFLGLLRK HRPGAPLNGV ILTLNVADLT
AQSPAERLAA CAALRARLAE LRETLGIRFP VYLVVTKMDL LPGFSEYFRT LTSHLRAQIW
GFTLPYSRRR KTGDPQALHA ACAQELARLT LRLDQGLDTR LQEEYDLKSL QRLYTFPREF
AALGEPLLEA IEQIFLDSKF DATQLNNTLR GVFFTSAAQA QADAVADQLS IWQRFVRAIK
TARGESSASL PHALPDGNRS YFLHDLLTQF IFREAHLVEP NLQWAWRYRL LRLGGHLLVL
VLAFLLWQGM QTSQQTNGDY LNEISARATR LDGEVKAYTG KPAMAPVPTL LDSARELSAW
PELDPDAPPL TWRYGLYSVP PVTDSVASLY NRLLDQLLLP PLVKRMEYVL ADAIARQDSK
AAYDALRIYL LLNLDKDHED KYNAAEIQSW VINDLGNSDS VAGFGGRAAV LTHIEALFDG
SRVVHSPYEK NEALIRQARA FLDGHTSTER IYARALAAME SEAPQEFTLV RAVGADAGTV
FVRSNGAPLD RGVPGIFTRE GYRELFDKRL PEFVAAATAN DGWVMGREST PKKLTDSLRS
QIPGQEQSVA REVRRLYLTE YARRWQDFLD SIHSINSAGE EGSSGLAYDL QVLRTLASPD
SPLMRLGKAV VEQTTLVPPP DPQARQKQLA QRASGNAGKV VQTAKLFQDI HPEERLEKTL
VDDRFAALRE VIAGRTDGGQ SGGGTMQIAS LLTMLNEYYT QLTIADSALA AGTLPARITA
ADKLQLEAAK LPAPLKNILL DLTKQGTRKI NAGTGDVLNT QMEAMMGDDC RDAIDGRYPF
ADSPQEVSAE DFNRIFASGG VLDAFWSKQL APLADTASDP WRYKPTEGNM TLQGPDLTPF
QQAKQIRSVF FNSEGGKKFS WSMQISVVDM DPAITELVID IDGQVLRYAH GPDRPLKVTW
PGPRNGSMAE ITASPRIRQD TSTLLTGGPW ALFHLLDAGM VQETAVRGRQ LVEYDFDGRR
VVLEITAGRD FNPVSRELLQ NFSCPARAL